chr3:10183462:> Detail (hg19) (VHL)

Information

Genome

Assembly Position
hg19 chr3:10,183,462-10,195,351
hg38 chr3:10,141,778-10,153,667 

HGVS

Type Transcript Protein
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

[No Data.]

Prediction

[No Data.]

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
Disease Drug EL ET ED CS VO TR Pubmed Links
von Hippel-Lindau disease C Predisposing Supports Uncertain Significance Rare Germline 2 8707293 Detail
von Hippel-Lindau disease C Predisposing Supports Uncertain Significance Rare Germline 2 9829912 Detail
DisGeNET
Score Disease name Description Source Pubmed Links
0.003 squamous cell carcinoma NA BeFree,LHGDN Detail
<0.001 Cardiovascular Diseases NA BeFree Detail
0.002 Cerebellar Neoplasms NA GAD Detail
<0.001 Congenital chromosomal disease NA BeFree Detail
0.003 colorectal carcinoma NA BeFree,GAD Detail
<0.001 cystadenoma NA BeFree Detail
<0.001 Cyst NA BeFree Detail
<0.001 Endocrine Gland Neoplasms NA BeFree Detail
0.003 Disorder of eye NA LHGDN Detail
<0.001 Fenestration (morphologic abnormality) NA BeFree Detail
0.001 Glioma NA BeFree Detail
<0.001 glomerulonephritis NA BeFree Detail
0.009 Head and Neck Neoplasms NA GAD Detail
0.002 hemangioma NA BeFree Detail
<0.001 Hemangiosarcoma NA BeFree Detail
<0.001 hepatitis B All of these results show that HBV up-regulated miR-331-3p expression in HCC cel... BeFree 25750939 Detail
0.658 Von Hippel-Lindau syndrome Mutations in the von Hippel-Lindau (VHL) gene are pathogenic in VHL disease, con... BeFree,CLINVAR,CTD_human,GAD,LHGDN,MGD,ORPHANET,UNIPROT 24969085 Detail
0.658 Von Hippel-Lindau syndrome Von Hippel-Lindau (VHL) disease is an autosomal dominant syndrome caused by germ... BeFree,CLINVAR,CTD_human,GAD,LHGDN,MGD,ORPHANET,UNIPROT 25069792 Detail
0.658 Von Hippel-Lindau syndrome Alterations of the von Hippel-Lindau (VHL) tumor suppressor gene can cause diffe... BeFree,CLINVAR,CTD_human,GAD,LHGDN,MGD,ORPHANET,UNIPROT 25490036 Detail
0.658 Von Hippel-Lindau syndrome Identification of a novel duplication mutation in the VHL gene in a large Chines... BeFree,CLINVAR,CTD_human,GAD,LHGDN,MGD,ORPHANET,UNIPROT 25501229 Detail
0.658 Von Hippel-Lindau syndrome Von Hippel-Lindau (VHL) disease is a hereditary tumor disorder caused by mutatio... BeFree,CLINVAR,CTD_human,GAD,LHGDN,MGD,ORPHANET,UNIPROT 25563310 Detail
0.658 Von Hippel-Lindau syndrome DNA extracted from the peripheral blood of all live members and from tissue of d... BeFree,CLINVAR,CTD_human,GAD,LHGDN,MGD,ORPHANET,UNIPROT 25966224 Detail
<0.001 hydrocephalus NA BeFree Detail
<0.001 Intestinal Neoplasms NA BeFree Detail
<0.001 ischemia NA BeFree Detail
<0.001 Kidney Failure, Chronic NA BeFree Detail
0.220 Kidney Neoplasm The majority of renal tumors in adults are clear cell renal cell carcinomas, whi... BeFree,CTD_human,GAD,LHGDN,RGD 25619751 Detail
<0.001 Cystic kidney NA BeFree Detail
<0.001 chronic lymphocytic leukemia NA BeFree Detail
<0.001 Myeloid Leukemia, Chronic NA BeFree Detail
<0.001 acute promyelocytic leukemia NA BeFree Detail
0.120 Lung Neoplasms NA BeFree,CTD_human Detail
0.003 lymphoma NA LHGDN Detail
0.002 Lymphoproliferative Disorders NA GAD Detail
<0.001 Malignant neoplasm of stomach NA BeFree Detail
0.010 multiple endocrine neoplasia type 2A NA BeFree,GAD Detail
0.003 meningioma NA BeFree,LHGDN Detail
<0.001 Mesothelioma NA BeFree Detail
0.003 Mouth Neoplasms NA LHGDN Detail
<0.001 Muscle Cramp NA BeFree Detail
0.002 Neoplasm Metastasis NA BeFree Detail
<0.001 multiple endocrine neoplasia NA BeFree Detail
0.002 Neoplasms, Multiple Primary NA GAD Detail
0.200 nephroblastoma NA CTD_human,RGD Detail
<0.001 Nervous System Neoplasms NA BeFree Detail
<0.001 neuroblastoma NA BeFree Detail
0.002 neurofibromatosis 1 NA BeFree Detail
<0.001 ovarian carcinoma NA BeFree Detail
<0.001 Pancreatic Cyst NA BeFree Detail
0.006 Pancreatic Neoplasm NA BeFree,GAD,LHGDN Detail
0.037 paraganglioma Mutations of the von Hippel-Lindau (VHL) gene are associated with pheochromocyto... BeFree,GAD,LHGDN 25385837 Detail
0.037 paraganglioma The present study gives a comprehensive picture of alterations in energy metabol... BeFree,GAD,LHGDN 25459911 Detail
<0.001 Extra-Adrenal Paraganglioma NA BeFree Detail
0.416 pheochromocytoma Mutations of the von Hippel-Lindau (VHL) gene are associated with pheochromocyto... BeFree,CLINVAR,CTD_human,GAD,LHGDN,UNIPROT 25385837 Detail
0.416 pheochromocytoma VHL gene mutation analysis of a Chinese family with non- syndromic pheochromocyt... BeFree,CLINVAR,CTD_human,GAD,LHGDN,UNIPROT 25773797 Detail
0.015 polycythemia Mutations in the von Hippel-Lindau (VHL) gene are pathogenic in VHL disease, con... BeFree,GAD,LHGDN 24969085 Detail
0.004 Adenomatous Polyposis Coli NA BeFree,LHGDN Detail
<0.001 kidney failure NA BeFree Detail
<0.001 Retinal Diseases NA BeFree Detail
<0.001 retinoblastoma NA BeFree Detail
<0.001 spermatocele NA BeFree Detail
0.080 sudden infant death syndrome NA MGD Detail
0.003 thrombosis NA LHGDN Detail
0.003 Thyroid Neoplasm NA BeFree,LHGDN Detail
0.003 Tongue Neoplasms NA LHGDN Detail
<0.001 Trisomy NA BeFree Detail
<0.001 tuberous sclerosis NA BeFree Detail
<0.001 Varicosity NA BeFree Detail
<0.001 Vascular Diseases NA BeFree Detail
<0.001 severe combined immunodeficiency NA BeFree Detail
<0.001 Small cell carcinoma of lung NA BeFree Detail
<0.001 Adenocarcinoma of lung (disorder) NA BeFree Detail
<0.001 Familial erythrocytosis NA BeFree Detail
<0.001 Malignant neoplasm of tongue NA BeFree Detail
0.002 Malignant neoplasm of brain NA GAD Detail
0.001 Hemangioma of retina NA BeFree Detail
<0.001 Neurofibromatoses NA BeFree Detail
0.002 Tumor Progression The functional RSUME/pVHL interaction in VHL-related tumor progression was furth... BeFree 25500545 Detail
<0.001 Adenoma, Microcystic NA BeFree Detail
<0.001 leiomyomatosis NA BeFree Detail
0.001 Adenocarcinoma, Clear Cell NA BeFree Detail
<0.001 Follicular thyroid carcinoma NA BeFree Detail
<0.001 acinar cell carcinoma NA BeFree Detail
<0.001 Cystadenoma, Serous NA BeFree Detail
0.021 hemangioblastoma NA BeFree,GAD,LHGDN Detail
0.001 Neuroendocrine Tumors NA BeFree Detail
<0.001 rapidly progressive glomerulonephritis NA BeFree Detail
<0.001 Gastrointestinal Stromal Tumors NA BeFree Detail
<0.001 hemangioma of liver NA BeFree Detail
<0.001 Medullary carcinoma of thyroid NA BeFree Detail
<0.001 Papillary thyroid carcinoma Alterations of the von Hippel-Lindau (VHL) tumor suppressor gene can cause diffe... BeFree 25490036 Detail
<0.001 Malignant neoplasm of lung NA BeFree Detail
0.080 Parkinsonian Disorders NA RGD Detail
<0.001 Chronic colitis NA BeFree Detail
<0.001 Renal glomerular disease NA BeFree Detail
<0.001 Simple renal cyst NA BeFree Detail
<0.001 Metastatic Renal Cell Cancer NA BeFree Detail
<0.001 Solid tumour NA BeFree Detail
0.001 Vascular Neoplasms NA BeFree Detail
<0.001 Venous retinal branch occlusion NA BeFree Detail
<0.001 Oncocytoma, renal NA BeFree Detail
<0.001 Tumor Initiation Since loss of VHL is frequently detected early phase genetic event in human rena... BeFree 25499220 Detail
<0.001 Epithelial ovarian cancer NA BeFree Detail
0.001 breast carcinoma NA BeFree Detail
<0.001 Carcinoma of lung NA BeFree Detail
<0.001 Secondary malignant neoplasm of lymph node NA BeFree Detail
<0.001 colon carcinoma NA BeFree Detail
<0.001 Carcinoma of bladder NA BeFree Detail
<0.001 Central neuroblastoma NA BeFree Detail
<0.001 Dissecting aneurysm of the thoracic aorta NA BeFree Detail
0.022 Malignant neoplasm of kidney Clear cell renal cell carcinoma (ccRCC) is the major subtype of kidney cancer th... BeFree,GAD 25873528 Detail
<0.001 ovarian neoplasm NA BeFree Detail
<0.001 Renal ischaemia NA BeFree Detail
<0.001 Hurthle Cell Tumor NA BeFree Detail
<0.001 Pheochromocytoma, Extra-Adrenal NA BeFree Detail
<0.001 Clear cell tumor NA BeFree Detail
<0.001 papillary renal cell carcinoma NA BeFree Detail
0.001 Cerebellar hemangioblastoma NA BeFree Detail
0.001 Hereditary Malignant Neoplasm NA BeFree Detail
<0.001 Paragangliomas, head and neck NA BeFree Detail
0.001 Central Nervous System Hemangioblastoma Familial cases of central nervous system hemangioblastoma uniformly result from ... BeFree 25589003 Detail
<0.001 Hereditary Paraganglioma NA BeFree Detail
<0.001 Nodular Neoplasm NA BeFree Detail
0.002 Non-Hereditary Clear Cell Renal Cell Carcinoma NA BeFree Detail
0.658 Von Hippel-Lindau syndrome Germline mutations in the Von Hippel-Lindau disease (VHL) gene in families from ... UNIPROT 8956040 Detail
<0.001 Well Differentiated Pancreatic Endocrine Tumor NA BeFree Detail
<0.001 differentiated thyroid gland carcinoma NA BeFree Detail
<0.001 Epithelioma NA BeFree Detail
0.013 renal carcinoma Clear cell renal cell carcinoma (ccRCC) is the major subtype of kidney cancer th... BeFree 25873528 Detail
0.005 Mammary Neoplasms NA LHGDN Detail
<0.001 Angiogenic Switch NA BeFree Detail
<0.001 Desmoplastic NA BeFree Detail
<0.001 Malignant Conversion NA BeFree Detail
<0.001 Tumor Angiogenesis NA BeFree Detail
<0.001 Erythrocytosis NA BeFree Detail
<0.001 Alport syndrome NA BeFree Detail
<0.001 Meningioma, benign, no ICD-O subtype NA BeFree Detail
<0.001 HEREDITARY RENAL CANCER ASSOCIATED 1 NA BeFree Detail
<0.001 Multiple endocrine neoplasia (MEN) Syndrome NA BeFree Detail
0.001 Angioma NA BeFree Detail
<0.001 liver carcinoma Hsa-miR-331-3p inhibits VHL expression by directly targeting its mRNA 3'-UTR in ... BeFree 25750939 Detail
0.001 Endolymphatic sac tumor NA BeFree Detail
<0.001 Angiopathy, Hereditary, With Nephropathy, Aneurysms, And Muscle Cramps NA BeFree Detail
0.001 Bilateral pheochromocytoma and islet cell adenoma of the pancreas NA BeFree Detail
<0.001 Pancreatic islet cell tumors NA BeFree Detail
<0.001 Familial renal cell carcinoma NA BeFree Detail
<0.001 Nasopharyngeal carcinoma NA BeFree Detail
0.008 Clear-cell metastatic renal cell carcinoma Molecular alterations in the VHL gene were not restricted to clear-cell RCCs (cc... BeFree 24727139 Detail
0.008 Clear-cell metastatic renal cell carcinoma In the past decade, our understanding of the genetic mutations associated with s... BeFree 25365943 Detail
0.008 Clear-cell metastatic renal cell carcinoma One TFE3-negative tumour with normal 7/17 but LOH 3p (VHL abnormality) was diagn... BeFree 25544614 Detail
0.005 myelodysplastic syndrome NA GAD,LHGDN Detail
<0.001 Unspecified visual loss NA BeFree Detail
0.004 adenocarcinoma NA BeFree,LHGDN Detail
0.121 adenoma NA BeFree,CTD_human Detail
0.024 Adrenal Gland Neoplasms NA GAD Detail
<0.001 Aneurysm NA BeFree Detail
0.008 Anoxia NA LHGDN Detail
<0.001 Astrocytoma NA BeFree Detail
<0.001 ataxia telangiectasia NA BeFree Detail
<0.001 Malignant neoplasm of urinary bladder NA BeFree Detail
0.080 Bladder Neoplasm NA RGD Detail
0.003 Malignant neoplasm of breast NA BeFree,GAD Detail
<0.001 Non-small cell lung carcinoma NA BeFree Detail
<0.001 Carcinoma, Papillary NA BeFree Detail
0.239 renal cell carcinoma The frequencies of molecular changes in the VHL gene in RCCs vary among differen... BeFree,CTD_human,GAD,LHGDN 24727139 Detail
0.239 renal cell carcinoma We genotyped 70 genes involved in the pathogenesis of renal-cell carcinoma (incl... BeFree,CTD_human,GAD,LHGDN 24767687 Detail
0.239 renal cell carcinoma The small-molecule probes STF-31 and its analogue compound 146 were discovered w... BeFree,CTD_human,GAD,LHGDN 25058389 Detail
0.239 renal cell carcinoma Genomic analysis of multi-focal renal cell carcinomas from an individual with a ... BeFree,CTD_human,GAD,LHGDN 25159823 Detail
0.239 renal cell carcinoma Two single nucleotide polymorphisms in the von Hippel-Lindau tumor suppressor ge... BeFree,CTD_human,GAD,LHGDN 25217002 Detail
0.239 renal cell carcinoma Clear cell renal cell carcinomas (RCC) frequently display inactivation of von Hi... BeFree,CTD_human,GAD,LHGDN 25297632 Detail
0.239 renal cell carcinoma Renal cell carcinoma (RCC) of clear-cell type (ccRCC), the most common type, beg... BeFree,CTD_human,GAD,LHGDN 25359211 Detail
0.239 renal cell carcinoma In the past decade, our understanding of the genetic mutations associated with s... BeFree,CTD_human,GAD,LHGDN 25365943 Detail
0.239 renal cell carcinoma Since loss of VHL is frequently detected early phase genetic event in human rena... BeFree,CTD_human,GAD,LHGDN 25499220 Detail
0.239 renal cell carcinoma The development of new forms of treatment of advanced renal cell carcinoma over ... BeFree,CTD_human,GAD,LHGDN 25564569 Detail
0.239 renal cell carcinoma Our data demonstrate that SF1126 treatment abrogates the stabilization of HIF-2α... BeFree,CTD_human,GAD,LHGDN 25578041 Detail
0.239 renal cell carcinoma PI3Kβ inhibitor TGX221 selectively inhibits renal cell carcinoma cells with both... BeFree,CTD_human,GAD,LHGDN 25853938 Detail
0.239 renal cell carcinoma RCC is frequently caused by VHL gene mutations, which contribute to 75% of all R... BeFree,CTD_human,GAD,LHGDN 25957660 Detail
Annotation

Annotations

DescrptionSourceLinks
Of 65 VHL families from central Europe, 53 were identified with germline mutations. This mutation w... CIViC Evidence Detail
Screening of 92 unrelated patients with VHL disease revealed 61 DNA variants. No variants were found... CIViC Evidence Detail
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All of these results show that HBV up-regulated miR-331-3p expression in HCC cell lines and miR-331-... DisGeNET Detail
Mutations in the von Hippel-Lindau (VHL) gene are pathogenic in VHL disease, congenital polycythaemi... DisGeNET Detail
Von Hippel-Lindau (VHL) disease is an autosomal dominant syndrome caused by germline mutations in th... DisGeNET Detail
Alterations of the von Hippel-Lindau (VHL) tumor suppressor gene can cause different hereditary tumo... DisGeNET Detail
Identification of a novel duplication mutation in the VHL gene in a large Chinese family with Von Hi... DisGeNET Detail
Von Hippel-Lindau (VHL) disease is a hereditary tumor disorder caused by mutations or deletions of t... DisGeNET Detail
DNA extracted from the peripheral blood of all live members and from tissue of deceased family membe... DisGeNET Detail
NA DisGeNET Detail
NA DisGeNET Detail
NA DisGeNET Detail
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The majority of renal tumors in adults are clear cell renal cell carcinomas, which are characterized... DisGeNET Detail
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Mutations of the von Hippel-Lindau (VHL) gene are associated with pheochromocytomas and paragangliom... DisGeNET Detail
The present study gives a comprehensive picture of alterations in energy metabolism in SDH- and VHL-... DisGeNET Detail
NA DisGeNET Detail
Mutations of the von Hippel-Lindau (VHL) gene are associated with pheochromocytomas and paragangliom... DisGeNET Detail
VHL gene mutation analysis of a Chinese family with non- syndromic pheochromocytomas and patients wi... DisGeNET Detail
Mutations in the von Hippel-Lindau (VHL) gene are pathogenic in VHL disease, congenital polycythaemi... DisGeNET Detail
NA DisGeNET Detail
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The functional RSUME/pVHL interaction in VHL-related tumor progression was further confirmed using a... DisGeNET Detail
NA DisGeNET Detail
NA DisGeNET Detail
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Alterations of the von Hippel-Lindau (VHL) tumor suppressor gene can cause different hereditary tumo... DisGeNET Detail
NA DisGeNET Detail
NA DisGeNET Detail
NA DisGeNET Detail
NA DisGeNET Detail
NA DisGeNET Detail
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Since loss of VHL is frequently detected early phase genetic event in human renal cell carcinoma, pV... DisGeNET Detail
NA DisGeNET Detail
NA DisGeNET Detail
NA DisGeNET Detail
NA DisGeNET Detail
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Clear cell renal cell carcinoma (ccRCC) is the major subtype of kidney cancer that is characterized ... DisGeNET Detail
NA DisGeNET Detail
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Familial cases of central nervous system hemangioblastoma uniformly result from mutations in the Von... DisGeNET Detail
NA DisGeNET Detail
NA DisGeNET Detail
NA DisGeNET Detail
Germline mutations in the Von Hippel-Lindau disease (VHL) gene in families from North America, Europ... DisGeNET Detail
NA DisGeNET Detail
NA DisGeNET Detail
NA DisGeNET Detail
Clear cell renal cell carcinoma (ccRCC) is the major subtype of kidney cancer that is characterized ... DisGeNET Detail
NA DisGeNET Detail
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Hsa-miR-331-3p inhibits VHL expression by directly targeting its mRNA 3'-UTR in HCC cell lines. DisGeNET Detail
NA DisGeNET Detail
NA DisGeNET Detail
NA DisGeNET Detail
NA DisGeNET Detail
NA DisGeNET Detail
NA DisGeNET Detail
Molecular alterations in the VHL gene were not restricted to clear-cell RCCs (ccRCCs). DisGeNET Detail
In the past decade, our understanding of the genetic mutations associated with sporadic forms of RCC... DisGeNET Detail
One TFE3-negative tumour with normal 7/17 but LOH 3p (VHL abnormality) was diagnosed as clear cell R... DisGeNET Detail
NA DisGeNET Detail
NA DisGeNET Detail
NA DisGeNET Detail
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The frequencies of molecular changes in the VHL gene in RCCs vary among different populations. DisGeNET Detail
We genotyped 70 genes involved in the pathogenesis of renal-cell carcinoma (including the VHL/HIF/VE... DisGeNET Detail
The small-molecule probes STF-31 and its analogue compound 146 were discovered while searching for c... DisGeNET Detail
Genomic analysis of multi-focal renal cell carcinomas from an individual with a germline VHL mutatio... DisGeNET Detail
Two single nucleotide polymorphisms in the von Hippel-Lindau tumor suppressor gene in Taiwanese with... DisGeNET Detail
Clear cell renal cell carcinomas (RCC) frequently display inactivation of von Hippel-Lindau (VHL) ge... DisGeNET Detail
Renal cell carcinoma (RCC) of clear-cell type (ccRCC), the most common type, begins with an intragen... DisGeNET Detail
In the past decade, our understanding of the genetic mutations associated with sporadic forms of RCC... DisGeNET Detail
Since loss of VHL is frequently detected early phase genetic event in human renal cell carcinoma, pV... DisGeNET Detail
The development of new forms of treatment of advanced renal cell carcinoma over the past two decades... DisGeNET Detail
Our data demonstrate that SF1126 treatment abrogates the stabilization of HIF-2α in 786-0 (VHL-mutat... DisGeNET Detail
PI3Kβ inhibitor TGX221 selectively inhibits renal cell carcinoma cells with both VHL and SETD2 mutat... DisGeNET Detail
RCC is frequently caused by VHL gene mutations, which contribute to 75% of all RCCs. DisGeNET Detail

Overlapped Transcript Coordinates

Gene Transcript ID Exon Number Chromosome Start Stop Type Amino Mutation Transcript Position Links

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs5030806 dbSNP
Genome
hg19
Position
chr3:10,183,462-10,195,351
Variant Type
snv
Variant (CIViC) (CIViC Variant)
C77ins (c.230_insTCT)
Variant URL (CIViC Variant)
https://civic.genome.wustl.edu/links/variants/1995
Variant (CIViC) (CIViC Variant)
V66del (c.197_220del)
Variant URL (CIViC Variant)
https://civic.genome.wustl.edu/links/variants/2099
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