chr1:65592830:A>G Detail (hg38) (LEPR)

Information

Genome

Assembly Position
hg19 chr1:66,058,513-66,058,513 View the variant detail on this assembly version.
hg38 chr1:65,592,830-65,592,830

HGVS

Type Transcript Protein
RefSeq NM_001198687.1:c.668A>G NP_001185616.1:p.Gln223Arg
NM_001198688.1:c.668A>G NP_001185617.1:p.Gln223Arg
NM_002303.5:c.668A>G NP_002294.2:p.Gln223Arg
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:0.871
ToMMo:0.864
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:0.878

Prediction

ClinVar

Clinical Significance Benign
Review star
Show details
Links
Type Database ID Link
Gene MIM 601007 OMIM
HGNC 6554 HGNC
Ensembl ENSG00000116678 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar tgv1821815 TogoVar
COSMIC
MONDO
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
Clinical significance Last evaluated Review status Condition Origin Links
Benign 2007-11-01 no assertion criteria provided LEPTIN RECEPTOR POLYMORPHISM germline Detail
Benign 2016-06-14 criteria provided, single submitter Monogenic Non-Syndromic Obesity germline Detail
Benign 2016-06-14 criteria provided, single submitter Obesity due to leptin receptor gene deficiency germline Detail
Benign 2017-07-26 criteria provided, single submitter not specified germline Detail
Benign 2024-01-31 criteria provided, multiple submitters, no conflicts not provided germline Detail
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
<0.001 Alcoholic Steatohepatitis We observed a significant association between the LEPR rs1137100 and rs1137101 w... BeFree 23278404 Detail
<0.001 Conventional (Clear Cell) Renal Cell Carcinoma Association of leptin receptor Lys109Arg and Gln223Arg polymorphisms with increa... BeFree 24935373 Detail
0.439 obesity Some polymorphic genes involved in the regulation of leptin-the leptin gene (LEP... BeFree 15972940 Detail
0.124 Overweight Three LEPR polymorphisms (Lys(109)Arg, Gln(223)Arg, and Lys(656)Asn) were typed ... BeFree 11443193 Detail
<0.001 Non-alcoholic Fatty Liver Disease We observed a significant association between the LEPR rs1137100 and rs1137101 w... BeFree 23278404 Detail
<0.001 Alcoholic Steatohepatitis We observed a significant association between the LEPR rs1137100 and rs1137101 w... BeFree 23278404 Detail
<0.001 Leukemia, Lymphocytic, Acute, L1 Plasma levels of leptin and soluble leptin receptor and polymorphisms of leptin ... BeFree 21631924 Detail
<0.001 Leukemia, Lymphocytic, Acute, L1 Plasma levels of leptin and soluble leptin receptor and polymorphisms of leptin ... BeFree 21631924 Detail
0.641 obesity This study examined the association of a promoter polymorphism of the leptin gen... BeFree 20183928 Detail
0.641 obesity Three non-synonymous single nucleotide polymorphisms (Q223R, K109R and K656N) of... BeFree 22028824 Detail
0.006 Impaired glucose tolerance Two polymorphisms (Lys109Arg, Gln223Arg) in the extracellular domain of the lept... BeFree 15997246 Detail
0.641 obesity Some polymorphic genes involved in the regulation of leptin-the leptin gene (LEP... BeFree 15972940 Detail
0.003 atherosclerosis Leptin receptor Lys109Arg and Gln223Arg polymorphisms are associated with early ... BeFree 20874424 Detail
0.002 obesity Some polymorphic genes involved in the regulation of leptin-the leptin gene (LEP... BeFree 15972940 Detail
<0.001 arteriosclerosis Leptin receptor Lys109Arg and Gln223Arg polymorphisms are associated with early ... BeFree 20874424 Detail
0.440 obesity This study examined the association of a promoter polymorphism of the leptin gen... BeFree 20183928 Detail
0.440 obesity Relationship between leptin G2548A and leptin receptor Q223R gene polymorphisms ... BeFree 22734460 Detail
0.641 obesity Association of leptin receptor gene Q223R polymorphism on lipid profiles in comp... BeFree 23954230 Detail
<0.001 Malignant neoplasm of mouth Association of leptin -2548G/A and leptin receptor Q223R polymorphisms with incr... BeFree 18855010 Detail
<0.001 Alzheimer Disease, Late Onset Lack of association between the leptin receptor gene (LEPR) Gln223Arg polymorphi... BeFree 20220325 Detail
0.240 Hypertensive disease Our results suggest that the Gln223Arg polymorphism of the leptin receptor is si... BeFree 24485307 Detail
0.007 breast carcinoma The association between LEPR Q223R polymorphisms and breast cancer risk. BeFree 25863476 Detail
0.440 obesity All the individuals were genotyped for the following subset of polymorphisms in ... BeFree 18704460 Detail
<0.001 amebiasis Humans with the Q223R leptin receptor mutation have increased susceptibility to ... BeFree 25516614 Detail
0.045 breast carcinoma And, it also suggested that LEPR gene Gln223Arg polymorphisms, elevated leptin, ... BeFree 18668212 Detail
<0.001 Malignant neoplasm of mouth Association of leptin -2548G/A and leptin receptor Q223R polymorphisms with incr... BeFree 18855010 Detail
0.641 obesity Obesity-related genetic factors including common polymorphisms in the leptin gen... BeFree 15159310 Detail
0.289 obesity All the individuals were genotyped for the following subset of polymorphisms in ... BeFree 18704460 Detail
0.641 obesity There was a trend found among the majority of homozygous A and G variants in LEP... BeFree 18955751 Detail
0.641 obesity p.Q223R leptin receptor polymorphism associated with obesity in Brazilian multie... BeFree 16788891 Detail
0.124 Overweight There was a trend found among the majority of homozygous A and G variants in LEP... BeFree 18955751 Detail
<0.001 Amebic colitis Humans with the Q223R leptin receptor mutation have increased susceptibility to ... BeFree 25516614 Detail
0.080 Left Ventricular Hypertrophy Our results suggest that the Gln223Arg polymorphism of the leptin receptor is si... BeFree 24485307 Detail
0.440 obesity Therefore, the present study aimed to evaluate the relationships among the gene ... BeFree 26255942 Detail
0.641 obesity The haplotype combination of LEP c.-2548G&gt;A and LEPR p.Q223R variants was rel... BeFree 18273796 Detail
0.024 obesity All the individuals were genotyped for the following subset of polymorphisms in ... BeFree 18704460 Detail
<0.001 acute leukemia The aim of the study was to evaluate bone marrow and peripheral blood leptin lev... BeFree 17072067 Detail
0.001 Malignant neoplasm of breast And, it also suggested that LEPR gene Gln223Arg polymorphisms, elevated leptin, ... BeFree 18668212 Detail
0.001 Overweight LEPR rs1137101(A) conferred higher risk for altered insulin, and HOMA-IR in over... BeFree 25923461 Detail
0.641 obesity The Q223R polymorphism of the leptin receptor gene is significantly associated w... BeFree 11549688 Detail
0.641 obesity A general linear model including leptin as dependant variable and age, BMI, meno... BeFree 19427969 Detail
0.641 obesity Association of Gln223 Arg polymorphism of the leptin receptor gene with indicato... BeFree 24985001 Detail
<0.001 acute leukemia The aim of the study was to evaluate bone marrow and peripheral blood leptin lev... BeFree 17072067 Detail
<0.001 Psychotic Disorders Taken together, the results of our study show that the LEPR Q223R polymorphism m... BeFree 19142102 Detail
0.641 obesity All the individuals were genotyped for the following subset of polymorphisms in ... BeFree 18704460 Detail
0.047 Malignant neoplasm of breast And, it also suggested that LEPR gene Gln223Arg polymorphisms, elevated leptin, ... BeFree 18668212 Detail
<0.001 Liver Abscess, Amebic We explored the distribution of Q223R mutation in leptin receptor gene of amoebi... BeFree 25114924 Detail
<0.001 Psychotic Disorders The LEPR Q223R polymorphism may be a risk factor for obesity in women with a psy... BeFree 21510767 Detail
0.641 obesity Relationship between leptin G2548A and leptin receptor Q223R gene polymorphisms ... BeFree 22734460 Detail
<0.001 Malignant neoplasm of breast And, it also suggested that LEPR gene Gln223Arg polymorphisms, elevated leptin, ... BeFree 18668212 Detail
0.641 obesity Association analysis of the Gln223Arg polymorphism in the human leptin receptor ... BeFree 15660115 Detail
0.012 Metabolic syndrome X Association between the Gln223Arg polymorphism of the leptin receptor and metabo... BeFree 19344216 Detail
0.132 Hypertensive disease Our results suggest that the Gln223Arg polymorphism of the leptin receptor is si... BeFree 24485307 Detail
0.217 Metabolic syndrome X Relationship between leptin G2548A and leptin receptor Q223R gene polymorphisms ... BeFree 22734460 Detail
0.440 obesity The aim of this study was to investigate the association of leptin receptor gene... BeFree 23954230 Detail
0.151 obesity Therefore, the present study aimed to evaluate the relationships among the gene ... BeFree 26255942 Detail
<0.001 Lip and oral cavity carcinoma Association of leptin -2548G/A and leptin receptor Q223R polymorphisms with incr... BeFree 18855010 Detail
0.003 Heart failure Multivariate regression analyses revealed an approximately 2-fold risk for NYHA ... BeFree 19337797 Detail
0.641 obesity The genotype and allele frequencies of the LEPR Gln223Arg polymorphism were sign... BeFree 12187394 Detail
0.440 obesity There was a trend found among the majority of homozygous A and G variants in LEP... BeFree 18955751 Detail
<0.001 Hyperlipidemia, Familial Combined The Gln223Arg polymorphism in the leptin receptor is associated with familial co... BeFree 16432543 Detail
0.013 obesity Therefore, the present study aimed to evaluate the relationships among the gene ... BeFree 26255942 Detail
0.024 Malignant neoplasm of breast Leptin receptor Gln223Arg polymorphism and breast cancer risk in Nigerian women:... BeFree 19017403 Detail
<0.001 Lip and oral cavity carcinoma Association of leptin -2548G/A and leptin receptor Q223R polymorphisms with incr... BeFree 18855010 Detail
<0.001 Hunger Individuals with a low postprandial decrease in hunger were overrepresented amon... BeFree 19793853 Detail
0.007 breast carcinoma Leptin receptor Gln223Arg polymorphism and breast cancer risk in Nigerian women:... BeFree 19017403 Detail
<0.001 Premenopausal breast cancer Our results suggest that the LEPR Gln223Arg polymorphism in the extracellular do... BeFree 19017403 Detail
<0.001 diarrhea The Q223R leptin receptor mutation results in increased susceptibility of childr... BeFree 25516614 Detail
0.008 gynecomastia Thus, the aim of this study was to evaluate the relationships between CYP19 (rs2... BeFree 24625355 Detail
<0.001 Psychotic Disorders Taken together, the results of our study show that the LEPR Q223R polymorphism m... BeFree 19142102 Detail
0.641 obesity In children with obesity we did not observe association of the LEPR Gln223Arg ge... BeFree 20156757 Detail
<0.001 eclampsia In this retrospective case-control study, 103 patients with PIH [gestational hyp... BeFree 20070288 Detail
0.124 Overweight The genotype and allele frequencies of the LEPR Gln223Arg polymorphism were sign... BeFree 12187394 Detail
<0.001 breast carcinoma And, it also suggested that LEPR gene Gln223Arg polymorphisms, elevated leptin, ... BeFree 18668212 Detail
0.641 obesity The LEPR Q223R polymorphism may be a risk factor for obesity in women with a psy... BeFree 21510767 Detail
0.641 obesity A tendency for the majority of homozygous A and G variants in LEP -2548 G/A and ... BeFree 18939509 Detail
<0.001 congestive heart failure In subanalyses according to CHF etiology the LEPR Gln223Arg showed an independen... BeFree 19337797 Detail
0.001 breast carcinoma And, it also suggested that LEPR gene Gln223Arg polymorphisms, elevated leptin, ... BeFree 18668212 Detail
0.012 Metabolic syndrome X Relationship between leptin G2548A and leptin receptor Q223R gene polymorphisms ... BeFree 22734460 Detail
0.641 obesity Therefore, the present study aimed to evaluate the relationships among the gene ... BeFree 26255942 Detail
<0.001 gynecomastia Thus, the aim of this study was to evaluate the relationships between CYP19 (rs2... BeFree 24625355 Detail
0.024 Malignant neoplasm of breast The association between LEPR Q223R polymorphisms and breast cancer risk. BeFree 25863476 Detail
0.001 eclampsia In this retrospective case-control study, 103 patients with PIH [gestational hyp... BeFree 20070288 Detail
0.124 Overweight A tendency for the majority of homozygous A and G variants in LEP -2548 G/A and ... BeFree 18939509 Detail
0.011 Overweight Together, our findings suggest evidence for a two-locus interaction between the ... BeFree 21233811 Detail
0.335 obesity Together, our findings suggest evidence for a two-locus interaction between the ... BeFree 21233811 Detail
0.124 Overweight Together, our findings suggest evidence for a two-locus interaction between the ... BeFree 21233811 Detail
<0.001 congestive heart failure The aim of this study was to investigate the possible associations of defined va... BeFree 19337797 Detail
0.001 congestive heart failure The aim of this study was to investigate the possible associations of defined va... BeFree 19337797 Detail
Annotation

Annotations

DescrptionSourceLinks
NM_002303.6(LEPR):c.668A>G (p.Gln223Arg) AND LEPTIN RECEPTOR POLYMORPHISM ClinVar Detail
NM_002303.6(LEPR):c.668A>G (p.Gln223Arg) AND Monogenic Non-Syndromic Obesity ClinVar Detail
NM_002303.6(LEPR):c.668A>G (p.Gln223Arg) AND Obesity due to leptin receptor gene deficiency ClinVar Detail
NM_002303.6(LEPR):c.668A>G (p.Gln223Arg) AND not specified ClinVar Detail
NM_002303.6(LEPR):c.668A>G (p.Gln223Arg) AND not provided ClinVar Detail
We observed a significant association between the LEPR rs1137100 and rs1137101 with susceptibility t... DisGeNET Detail
Association of leptin receptor Lys109Arg and Gln223Arg polymorphisms with increased risk of clear ce... DisGeNET Detail
Some polymorphic genes involved in the regulation of leptin-the leptin gene (LEP A19G), the leptin r... DisGeNET Detail
Three LEPR polymorphisms (Lys(109)Arg, Gln(223)Arg, and Lys(656)Asn) were typed on genomic DNA of 35... DisGeNET Detail
We observed a significant association between the LEPR rs1137100 and rs1137101 with susceptibility t... DisGeNET Detail
We observed a significant association between the LEPR rs1137100 and rs1137101 with susceptibility t... DisGeNET Detail
Plasma levels of leptin and soluble leptin receptor and polymorphisms of leptin gene -18G &gt; A and... DisGeNET Detail
Plasma levels of leptin and soluble leptin receptor and polymorphisms of leptin gene -18G &gt; A and... DisGeNET Detail
This study examined the association of a promoter polymorphism of the leptin gene (LEP), G-2548A (rs... DisGeNET Detail
Three non-synonymous single nucleotide polymorphisms (Q223R, K109R and K656N) of the leptin receptor... DisGeNET Detail
Two polymorphisms (Lys109Arg, Gln223Arg) in the extracellular domain of the leptin receptor predicte... DisGeNET Detail
Some polymorphic genes involved in the regulation of leptin-the leptin gene (LEP A19G), the leptin r... DisGeNET Detail
Leptin receptor Lys109Arg and Gln223Arg polymorphisms are associated with early atherosclerosis. DisGeNET Detail
Some polymorphic genes involved in the regulation of leptin-the leptin gene (LEP A19G), the leptin r... DisGeNET Detail
Leptin receptor Lys109Arg and Gln223Arg polymorphisms are associated with early atherosclerosis. DisGeNET Detail
This study examined the association of a promoter polymorphism of the leptin gene (LEP), G-2548A (rs... DisGeNET Detail
Relationship between leptin G2548A and leptin receptor Q223R gene polymorphisms and obesity and meta... DisGeNET Detail
Association of leptin receptor gene Q223R polymorphism on lipid profiles in comparison study between... DisGeNET Detail
Association of leptin -2548G/A and leptin receptor Q223R polymorphisms with increased risk for oral ... DisGeNET Detail
Lack of association between the leptin receptor gene (LEPR) Gln223Arg polymorphism and late-onset Al... DisGeNET Detail
Our results suggest that the Gln223Arg polymorphism of the leptin receptor is significantly associat... DisGeNET Detail
The association between LEPR Q223R polymorphisms and breast cancer risk. DisGeNET Detail
All the individuals were genotyped for the following subset of polymorphisms in obesity-related gene... DisGeNET Detail
Humans with the Q223R leptin receptor mutation have increased susceptibility to amebiasis, but the m... DisGeNET Detail
And, it also suggested that LEPR gene Gln223Arg polymorphisms, elevated leptin, insulin, TG, FCH, AP... DisGeNET Detail
Association of leptin -2548G/A and leptin receptor Q223R polymorphisms with increased risk for oral ... DisGeNET Detail
Obesity-related genetic factors including common polymorphisms in the leptin gene (LEP A19G and G-25... DisGeNET Detail
All the individuals were genotyped for the following subset of polymorphisms in obesity-related gene... DisGeNET Detail
There was a trend found among the majority of homozygous A and G variants in LEP -2548 G/A and LEPR ... DisGeNET Detail
p.Q223R leptin receptor polymorphism associated with obesity in Brazilian multiethnic subjects. DisGeNET Detail
There was a trend found among the majority of homozygous A and G variants in LEP -2548 G/A and LEPR ... DisGeNET Detail
Humans with the Q223R leptin receptor mutation have increased susceptibility to amebiasis, but the m... DisGeNET Detail
Our results suggest that the Gln223Arg polymorphism of the leptin receptor is significantly associat... DisGeNET Detail
Therefore, the present study aimed to evaluate the relationships among the gene polymorphisms ghreli... DisGeNET Detail
The haplotype combination of LEP c.-2548G&gt;A and LEPR p.Q223R variants was related to a 58% increa... DisGeNET Detail
All the individuals were genotyped for the following subset of polymorphisms in obesity-related gene... DisGeNET Detail
The aim of the study was to evaluate bone marrow and peripheral blood leptin level and frequency of ... DisGeNET Detail
And, it also suggested that LEPR gene Gln223Arg polymorphisms, elevated leptin, insulin, TG, FCH, AP... DisGeNET Detail
LEPR rs1137101(A) conferred higher risk for altered insulin, and HOMA-IR in overweight adolescents. DisGeNET Detail
The Q223R polymorphism of the leptin receptor gene is significantly associated with obesity and pred... DisGeNET Detail
A general linear model including leptin as dependant variable and age, BMI, menopausal status and ge... DisGeNET Detail
Association of Gln223 Arg polymorphism of the leptin receptor gene with indicators of energy expendi... DisGeNET Detail
The aim of the study was to evaluate bone marrow and peripheral blood leptin level and frequency of ... DisGeNET Detail
Taken together, the results of our study show that the LEPR Q223R polymorphism may be associated wit... DisGeNET Detail
All the individuals were genotyped for the following subset of polymorphisms in obesity-related gene... DisGeNET Detail
And, it also suggested that LEPR gene Gln223Arg polymorphisms, elevated leptin, insulin, TG, FCH, AP... DisGeNET Detail
We explored the distribution of Q223R mutation in leptin receptor gene of amoebic liver abscess (ALA... DisGeNET Detail
The LEPR Q223R polymorphism may be a risk factor for obesity in women with a psychotic disorder trea... DisGeNET Detail
Relationship between leptin G2548A and leptin receptor Q223R gene polymorphisms and obesity and meta... DisGeNET Detail
And, it also suggested that LEPR gene Gln223Arg polymorphisms, elevated leptin, insulin, TG, FCH, AP... DisGeNET Detail
Association analysis of the Gln223Arg polymorphism in the human leptin receptor gene, and traits rel... DisGeNET Detail
Association between the Gln223Arg polymorphism of the leptin receptor and metabolic syndrome in free... DisGeNET Detail
Our results suggest that the Gln223Arg polymorphism of the leptin receptor is significantly associat... DisGeNET Detail
Relationship between leptin G2548A and leptin receptor Q223R gene polymorphisms and obesity and meta... DisGeNET Detail
The aim of this study was to investigate the association of leptin receptor gene Q223R polymorphism ... DisGeNET Detail
Therefore, the present study aimed to evaluate the relationships among the gene polymorphisms ghreli... DisGeNET Detail
Association of leptin -2548G/A and leptin receptor Q223R polymorphisms with increased risk for oral ... DisGeNET Detail
Multivariate regression analyses revealed an approximately 2-fold risk for NYHA class IV associated ... DisGeNET Detail
The genotype and allele frequencies of the LEPR Gln223Arg polymorphism were significantly different ... DisGeNET Detail
There was a trend found among the majority of homozygous A and G variants in LEP -2548 G/A and LEPR ... DisGeNET Detail
The Gln223Arg polymorphism in the leptin receptor is associated with familial combined hyperlipidemi... DisGeNET Detail
Therefore, the present study aimed to evaluate the relationships among the gene polymorphisms ghreli... DisGeNET Detail
Leptin receptor Gln223Arg polymorphism and breast cancer risk in Nigerian women: a case control stud... DisGeNET Detail
Association of leptin -2548G/A and leptin receptor Q223R polymorphisms with increased risk for oral ... DisGeNET Detail
Individuals with a low postprandial decrease in hunger were overrepresented among TA/AA (dominant), ... DisGeNET Detail
Leptin receptor Gln223Arg polymorphism and breast cancer risk in Nigerian women: a case control stud... DisGeNET Detail
Our results suggest that the LEPR Gln223Arg polymorphism in the extracellular domain of the LEPR rec... DisGeNET Detail
The Q223R leptin receptor mutation results in increased susceptibility of children and adults to E. ... DisGeNET Detail
Thus, the aim of this study was to evaluate the relationships between CYP19 (rs2414096), ER alpha (r... DisGeNET Detail
Taken together, the results of our study show that the LEPR Q223R polymorphism may be associated wit... DisGeNET Detail
In children with obesity we did not observe association of the LEPR Gln223Arg gene polymorphism with... DisGeNET Detail
In this retrospective case-control study, 103 patients with PIH [gestational hypertension (GH) n = 3... DisGeNET Detail
The genotype and allele frequencies of the LEPR Gln223Arg polymorphism were significantly different ... DisGeNET Detail
And, it also suggested that LEPR gene Gln223Arg polymorphisms, elevated leptin, insulin, TG, FCH, AP... DisGeNET Detail
The LEPR Q223R polymorphism may be a risk factor for obesity in women with a psychotic disorder trea... DisGeNET Detail
A tendency for the majority of homozygous A and G variants in LEP -2548 G/A and LEPR 668 A/G was fou... DisGeNET Detail
In subanalyses according to CHF etiology the LEPR Gln223Arg showed an independent prediction role fo... DisGeNET Detail
And, it also suggested that LEPR gene Gln223Arg polymorphisms, elevated leptin, insulin, TG, FCH, AP... DisGeNET Detail
Relationship between leptin G2548A and leptin receptor Q223R gene polymorphisms and obesity and meta... DisGeNET Detail
Therefore, the present study aimed to evaluate the relationships among the gene polymorphisms ghreli... DisGeNET Detail
Thus, the aim of this study was to evaluate the relationships between CYP19 (rs2414096), ER alpha (r... DisGeNET Detail
The association between LEPR Q223R polymorphisms and breast cancer risk. DisGeNET Detail
In this retrospective case-control study, 103 patients with PIH [gestational hypertension (GH) n = 3... DisGeNET Detail
A tendency for the majority of homozygous A and G variants in LEP -2548 G/A and LEPR 668 A/G was fou... DisGeNET Detail
Together, our findings suggest evidence for a two-locus interaction between the LEPR Gln223Arg and A... DisGeNET Detail
Together, our findings suggest evidence for a two-locus interaction between the LEPR Gln223Arg and A... DisGeNET Detail
Together, our findings suggest evidence for a two-locus interaction between the LEPR Gln223Arg and A... DisGeNET Detail
The aim of this study was to investigate the possible associations of defined variability in leptin ... DisGeNET Detail
The aim of this study was to investigate the possible associations of defined variability in leptin ... DisGeNET Detail

Overlapped Transcript Coordinates

Gene Transcript ID Exon Number Chromosome Start Stop Type Amino Mutation Transcript Position Links

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs1137101 dbSNP
Genome
hg38
Position
chr1:65,592,830-65,592,830
Variant Type
snv
Reference Allele
A
Alternative Allele
G
Filtering Status (HGVD)
PASS
# of samples (HGVD)
1190
Mean of sample read depth (HGVD)
40.07
Standard deviation of sample read depth (HGVD)
18.90
Number of reference allele (HGVD)
306
Number of alternative allele (HGVD)
2066
Allele Frequency (HGVD)
0.8709949409780776
Gene Symbol (HGVD)
LEPR
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs1137101
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.8638
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
14477
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16760
East Asian Chromosome Counts (ExAC)
8642
East Asian Allele Counts (ExAC)
7590
East Asian Heterozygous Counts (ExAC)
934
East Asian Homozygous Counts (ExAC)
3328
East Asian Allele Frequency (ExAC)
0.8782689192316593
Chromosome Counts in All Race (ExAC)
121004
Allele Counts in All Race (ExAC)
61749
Heterozygous Counts in All Race (ExAC)
28711
Homozygous Counts in All Race (ExAC)
16519
Allele Frequency in All Race (ExAC)
0.5103054444481174
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