chr13:27960918:> Detail (hg38)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr13:28,535,055-28,543,452 |
| hg38 | chr13:27,960,918-27,969,315 |
HGVS
| Type | Transcript | Protein |
|---|---|---|
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
[No Data.]
Prediction
[No Data.]
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| 0.001 | squamous cell carcinoma | NA | BeFree | Detail | |
| 0.003 | cholelithiasis | NA | LHGDN | Detail | |
| <0.001 | Congenital chromosomal disease | NA | BeFree | Detail | |
| 0.012 | Colonic Neoplasms | NA | BeFree,LHGDN | Detail | |
| 0.001 | Colonic Polyps | NA | BeFree | Detail | |
| 0.003 | Crohn Disease | NA | LHGDN | Detail | |
| <0.001 | Diabetes Mellitus, Non-Insulin-Dependent | Vitamin D receptor Cdx-2-dependent response of central obesity to vitamin D inta... | BeFree | 26346470 | Detail |
| 0.003 | Endometrial Neoplasms | NA | LHGDN | Detail | |
| 0.003 | Esophageal Neoplasms | NA | BeFree,LHGDN | Detail | |
| <0.001 | esophagitis | NA | BeFree | Detail | |
| <0.001 | peptic esophagitis | NA | BeFree | Detail | |
| <0.001 | gastritis | NA | BeFree | Detail | |
| 0.004 | Gastritis, Atrophic | NA | BeFree,LHGDN | Detail | |
| 0.001 | gastroesophageal reflux disease | NA | BeFree | Detail | |
| <0.001 | Hamartoma | NA | BeFree | Detail | |
| <0.001 | Hyperphagia | NA | BeFree | Detail | |
| <0.001 | Inflammatory Bowel Diseases | NA | BeFree | Detail | |
| <0.001 | Intestinal Neoplasms | NA | BeFree | Detail | |
| 0.001 | Intestinal Polyps | NA | BeFree | Detail | |
| 0.001 | leukemia | NA | BeFree | Detail | |
| <0.001 | Acute lymphocytic leukemia | NA | BeFree | Detail | |
| <0.001 | Leukemia, Lymphocytic, Acute, L1 | NA | BeFree | Detail | |
| 0.005 | Leukemia, Myelocytic, Acute | NA | BeFree,LHGDN | Detail | |
| <0.001 | Myeloid Leukemia, Chronic | NA | BeFree | Detail | |
| <0.001 | Liver neoplasms | NA | BeFree | Detail | |
| <0.001 | Chronic Obstructive Airway Disease | NA | BeFree | Detail | |
| <0.001 | Lung Neoplasms | NA | BeFree | Detail | |
| 0.007 | Malignant neoplasm of stomach | Immunohistochemical molecular phenotypes of gastric cancer based on SOX2 and CDX... | BeFree | 25300947 | Detail |
| 0.007 | Malignant neoplasm of stomach | Overexpression of caudal type homeobox transcription factor 2 inhibits the growt... | BeFree | 25738600 | Detail |
| 0.007 | Malignant neoplasm of stomach | CDX2 inhibits invasion and migration of gastric cancer cells by phosphatase and ... | BeFree | 25881601 | Detail |
| 0.007 | Malignant neoplasm of stomach | Ectopic CDX2 expression plays a key function in the GC intestinal phenotype. | BeFree | 26033320 | Detail |
| <0.001 | melanoma | NA | BeFree | Detail | |
| 0.022 | Metaplasia | NA | LHGDN | Detail | |
| <0.001 | multiple sclerosis | NA | BeFree | Detail | |
| 0.004 | Neoplasm Metastasis | Foxa2 and Cdx2 cooperate with Nkx2-1 to inhibit lung adenocarcinoma metastasis. | BeFree,LHGDN | 26341558 | Detail |
| <0.001 | osteoporosis | NA | BeFree | Detail | |
| <0.001 | ovarian carcinoma | In addition, ovarian cancer susceptibility increased based on the homozygous and... | BeFree | 26287424 | Detail |
| <0.001 | Pancreatic Diseases | NA | BeFree | Detail | |
| 0.003 | Pancreatic Neoplasm | NA | LHGDN | Detail | |
| <0.001 | Peutz-Jeghers syndrome | NA | BeFree | Detail | |
| <0.001 | Adenomatous Polyposis Coli | NA | BeFree | Detail | |
| <0.001 | polyps | NA | BeFree | Detail | |
| <0.001 | Precancerous Conditions | NA | BeFree | Detail | |
| <0.001 | Rectal Neoplasms | NA | BeFree | Detail | |
| 0.017 | Stomach Neoplasms | NA | BeFree,LHGDN | Detail | |
| <0.001 | tuberculosis | NA | BeFree | Detail | |
| <0.001 | acute leukemia | NA | BeFree | Detail | |
| <0.001 | Chronic gastritis | NA | BeFree | Detail | |
| <0.001 | Pancreatitis, Chronic | NA | BeFree | Detail | |
| <0.001 | Small cell carcinoma of lung | NA | BeFree | Detail | |
| <0.001 | gastrointestinal carcinoma | NA | BeFree | Detail | |
| <0.001 | Adenocarcinoma of lung (disorder) | Foxa2 and Cdx2 cooperate with Nkx2-1 to inhibit lung adenocarcinoma metastasis. | BeFree | 26341558 | Detail |
| <0.001 | esophageal carcinoma | NA | BeFree | Detail | |
| <0.001 | Malignant neoplasm of gallbladder | NA | BeFree | Detail | |
| <0.001 | Secondary malignant neoplasm of lung | NA | BeFree | Detail | |
| 0.001 | Tumor Progression | NA | BeFree | Detail | |
| <0.001 | Adenocarcinoma, Tubular | NA | BeFree | Detail | |
| <0.001 | Adenomatous Polyps | NA | BeFree | Detail | |
| 0.003 | Medullary carcinoma | NA | LHGDN | Detail | |
| 0.006 | cholangiocarcinoma | NA | BeFree,LHGDN | Detail | |
| <0.001 | Cystadenocarcinoma, Mucinous | NA | BeFree | Detail | |
| <0.001 | Neuroendocrine Tumors | NA | BeFree | Detail | |
| <0.001 | Juvenile polyp | NA | BeFree | Detail | |
| <0.001 | gallbladder carcinoma | NA | BeFree | Detail | |
| <0.001 | pancreatic carcinoma | NA | BeFree | Detail | |
| <0.001 | Malignant neoplasm of lung | NA | BeFree | Detail | |
| <0.001 | Carcinoma, Small Cell | NA | BeFree | Detail | |
| <0.001 | Turcot syndrome (disorder) | Mismatch repair deficiency was correlated with CDX2 loss and E-cadherin expressi... | BeFree | 26619103 | Detail |
| <0.001 | Intestinal metaplasia of gastric mucosa | NA | BeFree | Detail | |
| <0.001 | Cystitis glandularis | NA | BeFree | Detail | |
| <0.001 | gastric adenocarcinoma | NA | BeFree | Detail | |
| <0.001 | Metastatic melanoma | NA | BeFree | Detail | |
| 0.002 | Adenocarcinoma Of Esophagus | NA | BeFree | Detail | |
| <0.001 | bladder adenocarcinoma | NA | BeFree | Detail | |
| <0.001 | Adenocarcinoma of pancreas | NA | BeFree | Detail | |
| <0.001 | Obesity, Abdominal | Vitamin D receptor Cdx-2-dependent response of central obesity to vitamin D inta... | BeFree | 26346470 | Detail |
| <0.001 | Hyperplastic Polyp | NA | BeFree | Detail | |
| <0.001 | Hamartomatous polyp | NA | BeFree | Detail | |
| <0.001 | Multiple polyps | NA | BeFree | Detail | |
| <0.001 | Adenocarcinoma of colon | NA | BeFree | Detail | |
| <0.001 | juvenile polyposis syndrome | NA | BeFree | Detail | |
| <0.001 | intestinal cancer | A polymorphic enhancer near GREM1 influences bowel cancer risk through different... | BeFree | 25131200 | Detail |
| <0.001 | Malignant neoplasm of pancreas | NA | BeFree | Detail | |
| <0.001 | Secondary malignant neoplasm of pancreas | NA | BeFree | Detail | |
| 0.001 | Helicobacter pylori (H. pylori) infection in conditions classified elsewhere and of unspecified site | NA | BeFree | Detail | |
| 0.002 | Malignant neoplasm of prostate | NA | BeFree | Detail | |
| <0.001 | endometrial carcinoma | NA | BeFree | Detail | |
| <0.001 | Malignant neoplasm of esophagus | NA | BeFree | Detail | |
| 0.007 | Carcinogenesis | Caudal type homeobox transcription factor 2 (CDX2) is important in intestinal ce... | BeFree | 25738600 | Detail |
| 0.001 | Leukemogenesis | NA | BeFree | Detail | |
| 0.002 | prostate carcinoma | NA | BeFree | Detail | |
| <0.001 | Gastro-esophageal reflux disease with esophagitis | NA | BeFree | Detail | |
| <0.001 | Epithelial ovarian cancer | NA | BeFree | Detail | |
| 0.001 | breast carcinoma | The GG genotype of Cdx2-VDR gene polymorphism may increase the risk of developin... | BeFree | 25799416 | Detail |
| <0.001 | Carcinoma of lung | NA | BeFree | Detail | |
| <0.001 | Malignant neoplasm of gastrointestinal tract | NA | BeFree | Detail | |
| 0.002 | Secondary malignant neoplasm of lymph node | NA | BeFree | Detail | |
| 0.008 | colon carcinoma | The homeoprotein encoded by the intestinal-specific Cdx2 gene is a major regulat... | BeFree | 25663763 | Detail |
| 0.008 | colon carcinoma | Biomarkers such as mismatch repair proteins, CDX2, p53, and E-cadherin are blame... | BeFree | 26619103 | Detail |
| 0.009 | stomach carcinoma | The COX-2-expressing cells were scattered, not diffusely expressed, in gastric c... | BeFree | 25228975 | Detail |
| 0.009 | stomach carcinoma | Immunohistochemical molecular phenotypes of gastric cancer based on SOX2 and CDX... | BeFree | 25300947 | Detail |
| 0.009 | stomach carcinoma | Overexpression of caudal type homeobox transcription factor 2 inhibits the growt... | BeFree | 25738600 | Detail |
| 0.009 | stomach carcinoma | CDX2 inhibits invasion and migration of gastric cancer cells by phosphatase and ... | BeFree | 25881601 | Detail |
| 0.009 | stomach carcinoma | Ectopic CDX2 expression plays a key function in the GC intestinal phenotype. | BeFree | 26033320 | Detail |
| <0.001 | Premenopausal breast cancer | Vitamin D receptor Cdx-2 polymorphism and premenopausal breast cancer risk in so... | BeFree | 25799416 | Detail |
| <0.001 | Poorly differentiated carcinoma | NA | BeFree | Detail | |
| 0.001 | Helicobacter pylori infection | NA | BeFree | Detail | |
| <0.001 | Adenoviral infections | NA | BeFree | Detail | |
| <0.001 | Intraepithelial Neoplasia | NA | BeFree | Detail | |
| <0.001 | precancerous lesions | NA | BeFree | Detail | |
| <0.001 | Colorectal cancer metastatic | NA | BeFree | Detail | |
| <0.001 | Invasive Ductal Breast Carcinoma | NA | BeFree | Detail | |
| <0.001 | Malignant neoplasm of ovary | In addition, ovarian cancer susceptibility increased based on the homozygous and... | BeFree | 26287424 | Detail |
| <0.001 | Squamous cell carcinoma of the head and neck | NA | BeFree | Detail | |
| 0.003 | Ductal Carcinoma | NA | BeFree,LHGDN | Detail | |
| <0.001 | large cell neuroendocrine carcinoma | NA | BeFree | Detail | |
| <0.001 | Precursor B-cell lymphoblastic leukemia | NA | BeFree | Detail | |
| 0.001 | Adenocarcinoma of large intestine | NA | BeFree | Detail | |
| <0.001 | Hereditary Nonpolyposis Colorectal Cancer | NA | BeFree | Detail | |
| <0.001 | Midgut Carcinoid Tumor | NA | BeFree | Detail | |
| <0.001 | Mucinous Neoplasm | NA | BeFree | Detail | |
| <0.001 | pancreatic ductal adenocarcinoma | NA | BeFree | Detail | |
| <0.001 | Mucin-Producing Intrahepatic Cholangiocarcinoma | NA | BeFree | Detail | |
| <0.001 | Ductal Breast Carcinoma | NA | BeFree | Detail | |
| <0.001 | Rectal Tumors | NA | BeFree | Detail | |
| <0.001 | Non-Malignant Ascites Adverse Event | NA | BeFree | Detail | |
| <0.001 | Non-Neoplastic Disorder | NA | BeFree | Detail | |
| <0.001 | prostatic hypertrophy | NA | BeFree | Detail | |
| <0.001 | ALPHA-THALASSEMIA/MENTAL RETARDATION SYNDROME, NONDELETION TYPE, X-LINKED | NA | BeFree | Detail | |
| <0.001 | biliary papillomatosis | NA | BeFree | Detail | |
| <0.001 | Precursor Cell Lymphoblastic Leukemia Lymphoma | NA | BeFree | Detail | |
| <0.001 | liver carcinoma | NA | BeFree | Detail | |
| <0.001 | Intestinal Neuroendocrine Carcinoma | NA | BeFree | Detail | |
| <0.001 | Experimental Organism Basal Cell Carcinoma | NA | BeFree | Detail | |
| <0.001 | Squamous cell carcinoma of the head and neck | In a post-hoc analysis of our previous prospective cohort study, VDR polymorphis... | BeFree | 22242137 | Detail |
| <0.001 | Epithelial ovarian cancer | The association of ovarian cancer risk with polymorphisms in the vitamin D recep... | BeFree | 18086759 | Detail |
| <0.001 | Non-small cell lung carcinoma | We evaluated the relationship between circulating 25-hydroxyvitamin D levels; VD... | BeFree | 18936471 | Detail |
| 0.038 | adenocarcinoma | We examined the association between COX-2 and DCAMKL1 expression in gastric carc... | BeFree,LHGDN | 25228975 | Detail |
| <0.001 | adenoma | NA | BeFree | Detail | |
| <0.001 | Anaplasia | NA | BeFree | Detail | |
| 0.006 | Barrett esophagus | NA | BeFree,LHGDN | Detail | |
| <0.001 | bile reflux | NA | BeFree | Detail | |
| 0.001 | Malignant neoplasm of breast | The GG genotype of Cdx2-VDR gene polymorphism may increase the risk of developin... | BeFree | 25799416 | Detail |
| 0.008 | Malignant tumor of colon | The homeoprotein encoded by the intestinal-specific Cdx2 gene is a major regulat... | BeFree | 25663763 | Detail |
| <0.001 | Rectal Carcinoma | NA | BeFree | Detail | |
| <0.001 | Malignant neoplasm of skin | NA | BeFree | Detail | |
| <0.001 | mucinous adenocarcinoma | NA | BeFree | Detail | |
| <0.001 | Non-small cell lung carcinoma | NA | BeFree | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| Vitamin D receptor Cdx-2-dependent response of central obesity to vitamin D intake in the subjects w... | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| Immunohistochemical molecular phenotypes of gastric cancer based on SOX2 and CDX2 predict patient ou... | DisGeNET | Detail |
| Overexpression of caudal type homeobox transcription factor 2 inhibits the growth of the MGC-803 hum... | DisGeNET | Detail |
| CDX2 inhibits invasion and migration of gastric cancer cells by phosphatase and tensin homologue del... | DisGeNET | Detail |
| Ectopic CDX2 expression plays a key function in the GC intestinal phenotype. | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| Foxa2 and Cdx2 cooperate with Nkx2-1 to inhibit lung adenocarcinoma metastasis. | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| In addition, ovarian cancer susceptibility increased based on the homozygous and dominant comparison... | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| Foxa2 and Cdx2 cooperate with Nkx2-1 to inhibit lung adenocarcinoma metastasis. | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| Mismatch repair deficiency was correlated with CDX2 loss and E-cadherin expression (p < 0.05). | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| Vitamin D receptor Cdx-2-dependent response of central obesity to vitamin D intake in the subjects w... | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| A polymorphic enhancer near GREM1 influences bowel cancer risk through differential CDX2 and TCF7L2 ... | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| Caudal type homeobox transcription factor 2 (CDX2) is important in intestinal cell fate specificatio... | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| The GG genotype of Cdx2-VDR gene polymorphism may increase the risk of developing breast cancer in y... | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| The homeoprotein encoded by the intestinal-specific Cdx2 gene is a major regulator of gut developmen... | DisGeNET | Detail |
| Biomarkers such as mismatch repair proteins, CDX2, p53, and E-cadherin are blamed for colon cancers,... | DisGeNET | Detail |
| The COX-2-expressing cells were scattered, not diffusely expressed, in gastric carcinomas from human... | DisGeNET | Detail |
| Immunohistochemical molecular phenotypes of gastric cancer based on SOX2 and CDX2 predict patient ou... | DisGeNET | Detail |
| Overexpression of caudal type homeobox transcription factor 2 inhibits the growth of the MGC-803 hum... | DisGeNET | Detail |
| CDX2 inhibits invasion and migration of gastric cancer cells by phosphatase and tensin homologue del... | DisGeNET | Detail |
| Ectopic CDX2 expression plays a key function in the GC intestinal phenotype. | DisGeNET | Detail |
| Vitamin D receptor Cdx-2 polymorphism and premenopausal breast cancer risk in southern Pakistani pat... | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| In addition, ovarian cancer susceptibility increased based on the homozygous and dominant comparison... | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| In a post-hoc analysis of our previous prospective cohort study, VDR polymorphisms including Cdx2 G/... | DisGeNET | Detail |
| The association of ovarian cancer risk with polymorphisms in the vitamin D receptor (VDR) gene, incl... | DisGeNET | Detail |
| We evaluated the relationship between circulating 25-hydroxyvitamin D levels; VDR polymorphisms, inc... | DisGeNET | Detail |
| We examined the association between COX-2 and DCAMKL1 expression in gastric carcinomas in clinical s... | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| The GG genotype of Cdx2-VDR gene polymorphism may increase the risk of developing breast cancer in y... | DisGeNET | Detail |
| The homeoprotein encoded by the intestinal-specific Cdx2 gene is a major regulator of gut developmen... | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
Overlapped Transcript Coordinates
| Gene | Transcript ID | Exon Number | Chromosome | Start | Stop | Type | Amino Mutation | Transcript Position | Links |
|---|
Overlapped Transcript
| Gene | Transcript ID | Chromosome | Start | Stop | Links |
|---|
- Gene
- -
- dbSNP
- rs10735810 dbSNP
- Genome
- hg38
- Position
- chr13:27,960,918-27,969,315
- Variant Type
- snv
Genome browser