chr1:7784291:> Detail (hg38)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr1:7,844,351-7,905,237 |
| hg38 | chr1:7,784,291-7,845,177 |
HGVS
| Type | Transcript | Protein |
|---|---|---|
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
[No Data.]
Prediction
[No Data.]
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| <0.001 | cleft palate | NA | BeFree | Detail | |
| <0.001 | ulcerative colitis | NA | BeFree | Detail | |
| <0.001 | Colonic Neoplasms | NA | BeFree | Detail | |
| <0.001 | colorectal carcinoma | PER3, a novel target of miR-103, plays a suppressive role in colorectal cancer i... | BeFree | 24393525 | Detail |
| 0.122 | Crohn Disease | NA | GAD,GWASCAT | Detail | |
| 0.002 | Mental Depression | NA | GAD | Detail | |
| <0.001 | Diabetes | NA | BeFree | Detail | |
| <0.001 | diabetes mellitus | NA | BeFree | Detail | |
| <0.001 | Diabetes Mellitus, Non-Insulin-Dependent | In the multivariate regression modeling, no predictive function of VNTR Per3 pol... | BeFree | 23128810 | Detail |
| <0.001 | Diabetes Mellitus, Non-Insulin-Dependent | Per3 length polymorphism in patients with type 2 diabetes mellitus. | BeFree | 25390010 | Detail |
| <0.001 | glioblastoma | NA | BeFree | Detail | |
| <0.001 | congestive heart failure | Per3 VNTR polymorphism is not a major risk factor for chronic heart failure or a... | BeFree | 23128810 | Detail |
| 0.003 | heroin dependence | NA | BeFree,LHGDN | Detail | |
| <0.001 | HIV Infections | NA | BeFree | Detail | |
| <0.001 | Hyperlipidemia, Familial Combined | NA | BeFree | Detail | |
| <0.001 | Inflammatory Bowel Diseases | NA | BeFree | Detail | |
| <0.001 | Acute lymphocytic leukemia | NA | BeFree | Detail | |
| 0.123 | Myeloid Leukemia, Chronic | NA | BeFree,CTD_human,LHGDN | Detail | |
| <0.001 | myocardial infarction | Our results indicate that the Per3 VNTR may contribute to modulation of cardiac ... | BeFree | 24866331 | Detail |
| <0.001 | Neoplasm Metastasis | Pairwise correlations between functionally-related clock genes (e.g., PER2-PER3 ... | BeFree | 25485508 | Detail |
| <0.001 | obesity | NA | BeFree | Detail | |
| 0.002 | Prostatic Neoplasms | NA | GAD | Detail | |
| <0.001 | Rectal Neoplasms | NA | BeFree | Detail | |
| 0.005 | schizophrenia | NA | BeFree,GAD | Detail | |
| 0.012 | Sleep Deprivation | NA | GAD | Detail | |
| 0.001 | Sleep disturbances | Screening of clock gene polymorphisms demonstrates association of a PER3 polymor... | BeFree | 25201053 | Detail |
| 0.001 | Sleep disturbances | A variable number tandem repeat (VNTR) in the PERIOD3 (PER3) gene has been assoc... | BeFree | 25501848 | Detail |
| 0.120 | Substance Withdrawal Syndrome | NA | CTD_human | Detail | |
| <0.001 | seasonal affective disorder | NA | BeFree | Detail | |
| <0.001 | Adenomatous Polyps | Susceptibility related to PER3 has not been examined in conjunction with adenoma... | BeFree | 25501848 | Detail |
| <0.001 | Jet Lag Syndrome | NA | BeFree | Detail | |
| <0.001 | pancreatic carcinoma | We found a significant down-regulation of ARNLT (p = 0.015), CRY1 (p = 0.013), C... | BeFree | 25798752 | Detail |
| 0.002 | Chronobiology Disorders | NA | GAD | Detail | |
| <0.001 | Chronic heart failure | Per3 VNTR polymorphism and chronic heart failure. | BeFree | 23128810 | Detail |
| <0.001 | Carcinoma breast stage IV | NA | BeFree | Detail | |
| <0.001 | Impaired cognition | NA | BeFree | Detail | |
| <0.001 | Streptococcal toxic shock syndrome | NA | BeFree | Detail | |
| <0.001 | Malignant neoplasm of pancreas | We found a significant down-regulation of ARNLT (p = 0.015), CRY1 (p = 0.013), C... | BeFree | 25798752 | Detail |
| 0.005 | Malignant neoplasm of prostate | NA | BeFree,GAD | Detail | |
| 0.004 | delayed sleep phase syndrome | NA | BeFree,GAD | Detail | |
| <0.001 | Recurrent tumor | NA | BeFree | Detail | |
| 0.003 | Mood Disorders | NA | BeFree,GAD | Detail | |
| <0.001 | prostate carcinoma | NA | BeFree | Detail | |
| 0.002 | Heroin Abuse | NA | GAD | Detail | |
| 0.001 | breast carcinoma | NA | BeFree | Detail | |
| <0.001 | colon carcinoma | NA | BeFree | Detail | |
| <0.001 | Premenopausal breast cancer | A variable number tandem repeat (VNTR) in the PERIOD3 (PER3) gene has been assoc... | BeFree | 25501848 | Detail |
| <0.001 | advanced sleep phase syndrome | NA | BeFree | Detail | |
| 0.006 | Sleep Disorders | Screening of clock gene polymorphisms demonstrates association of a PER3 polymor... | BeFree,GAD | 25201053 | Detail |
| 0.006 | Sleep Disorders | A variable number tandem repeat (VNTR) in the PERIOD3 (PER3) gene has been assoc... | BeFree,GAD | 25501848 | Detail |
| <0.001 | Delayed sleep phase | NA | BeFree | Detail | |
| 0.002 | Sleep Disorders, Circadian Rhythm | NA | GAD | Detail | |
| <0.001 | Sleeplessness | NA | BeFree | Detail | |
| 0.001 | breast carcinoma | In women with three consecutive night shifts, a reduced risk of breast cancer wa... | BeFree | 23822714 | Detail |
| <0.001 | Squamous cell carcinoma of the head and neck | NA | BeFree | Detail | |
| 0.002 | major depressive disorder | NA | GAD | Detail | |
| <0.001 | Postoperative confusion | Yet, if PER3(5/5) is associated with a higher incidence of postoperative cogniti... | BeFree | 25186550 | Detail |
| 0.001 | Malignant neoplasm of breast | In women with three consecutive night shifts, a reduced risk of breast cancer wa... | BeFree | 23822714 | Detail |
| 0.120 | Mammary Neoplasms | NA | CTD_human | Detail | |
| <0.001 | colorectal cancer | PER3, a novel target of miR-103, plays a suppressive role in colorectal cancer i... | BeFree | 24393525 | Detail |
| <0.001 | Rectal Tumors | NA | BeFree | Detail | |
| <0.001 | Glioblastoma multiforme | NA | BeFree | Detail | |
| <0.001 | Precursor Cell Lymphoblastic Leukemia Lymphoma | NA | BeFree | Detail | |
| <0.001 | adenoma | This exploratory case-control study was the first to test the hypothesis that th... | BeFree | 25501848 | Detail |
| <0.001 | Alcoholic Intoxication, Chronic | NA | BeFree | Detail | |
| <0.001 | rheumatoid arthritis | The circadian rhythm in expression of the clock genes PER2 and PER3 in CD14+ mon... | BeFree | 25535886 | Detail |
| <0.001 | Bacterial Infections | NA | BeFree | Detail | |
| 0.011 | bipolar disorder | NA | BeFree,GAD | Detail | |
| 0.001 | Malignant neoplasm of breast | NA | BeFree | Detail | |
| <0.001 | Malignant tumor of colon | NA | BeFree | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| PER3, a novel target of miR-103, plays a suppressive role in colorectal cancer in vitro. | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| In the multivariate regression modeling, no predictive function of VNTR Per3 polymorphism on ejectio... | DisGeNET | Detail |
| Per3 length polymorphism in patients with type 2 diabetes mellitus. | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| Per3 VNTR polymorphism is not a major risk factor for chronic heart failure or a factor modulating t... | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| Our results indicate that the Per3 VNTR may contribute to modulation of cardiac functions and interi... | DisGeNET | Detail |
| Pairwise correlations between functionally-related clock genes (e.g., PER2-PER3 and CRY2-PER3) were ... | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| Screening of clock gene polymorphisms demonstrates association of a PER3 polymorphism with morningne... | DisGeNET | Detail |
| A variable number tandem repeat (VNTR) in the PERIOD3 (PER3) gene has been associated with sleep dis... | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| Susceptibility related to PER3 has not been examined in conjunction with adenomatous polyps. | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| We found a significant down-regulation of ARNLT (p = 0.015), CRY1 (p = 0.013), CRY2 (p = 0.001), PER... | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| Per3 VNTR polymorphism and chronic heart failure. | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| We found a significant down-regulation of ARNLT (p = 0.015), CRY1 (p = 0.013), CRY2 (p = 0.001), PER... | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| A variable number tandem repeat (VNTR) in the PERIOD3 (PER3) gene has been associated with sleep dis... | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| Screening of clock gene polymorphisms demonstrates association of a PER3 polymorphism with morningne... | DisGeNET | Detail |
| A variable number tandem repeat (VNTR) in the PERIOD3 (PER3) gene has been associated with sleep dis... | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| In women with three consecutive night shifts, a reduced risk of breast cancer was associated with ca... | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| Yet, if PER3(5/5) is associated with a higher incidence of postoperative cognitive dysfunction, the ... | DisGeNET | Detail |
| In women with three consecutive night shifts, a reduced risk of breast cancer was associated with ca... | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| PER3, a novel target of miR-103, plays a suppressive role in colorectal cancer in vitro. | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| This exploratory case-control study was the first to test the hypothesis that the 5-repeat PER3 VNTR... | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| The circadian rhythm in expression of the clock genes PER2 and PER3 in CD14+ monocytes was lost in p... | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
Overlapped Transcript Coordinates
| Gene | Transcript ID | Exon Number | Chromosome | Start | Stop | Type | Amino Mutation | Transcript Position | Links |
|---|
Overlapped Transcript
| Gene | Transcript ID | Chromosome | Start | Stop | Links |
|---|
- Gene
- -
- dbSNP
- rs131113549 dbSNP
- Genome
- hg38
- Position
- chr1:7,784,291-7,845,177
- Variant Type
- snv
Genome browser