chr5:132294394:> Detail (hg38)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr5:131,630,087-131,679,883 |
| hg38 | chr5:132,294,394-132,344,190 |
HGVS
| Type | Transcript | Protein |
|---|---|---|
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
[No Data.]
Prediction
[No Data.]
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| 0.003 | celiac disease | NA | BeFree,GAD | Detail | |
| 0.023 | ulcerative colitis | NA | BeFree,GAD | Detail | |
| <0.001 | colorectal carcinoma | NA | BeFree | Detail | |
| 0.120 | Coxsackievirus Infections | NA | CTD_human | Detail | |
| 0.080 | Crohn Disease | Single nucleotide polymorphisms (SNPs) of Solute carrier family 22, member 4 (SL... | BeFree,GAD,LHGDN | 26329403 | Detail |
| 0.010 | Diabetes Mellitus, Insulin-Dependent | NA | BeFree,GAD | Detail | |
| 0.003 | Enterocolitis | NA | LHGDN | Detail | |
| 0.120 | Enterovirus Infections | NA | CTD_human | Detail | |
| <0.001 | pathologic fistula | NA | BeFree | Detail | |
| 0.002 | food allergy | NA | GAD | Detail | |
| 0.002 | Growth Disorders | NA | GAD | Detail | |
| <0.001 | Hypertensive disease | NA | BeFree | Detail | |
| 0.141 | Inflammatory Bowel Diseases | The effect of turmeric (Curcuma longa) extract on the functionality of the solut... | BeFree,CTD_human,GAD,LHGDN | 25314644 | Detail |
| <0.001 | ischemia | NA | BeFree | Detail | |
| <0.001 | leukemia | NA | BeFree | Detail | |
| <0.001 | Leukemia, Myelocytic, Acute | NA | BeFree | Detail | |
| <0.001 | Lupus Erythematosus, Systemic | NA | BeFree | Detail | |
| 0.122 | Fibrinogen Adverse Event | Novel loci, including those related to Crohn disease, psoriasis, and inflammatio... | GWASCAT | 20031577 | Detail |
| <0.001 | Mycoses | NA | BeFree | Detail | |
| 0.120 | myocarditis | NA | CTD_human | Detail | |
| 0.003 | Paratuberculosis | NA | BeFree,LHGDN | Detail | |
| <0.001 | polyps | NA | BeFree | Detail | |
| 0.003 | psoriasis | NA | BeFree,GAD | Detail | |
| 0.002 | Respiratory Syncytial Virus Infections | NA | GAD | Detail | |
| 0.002 | schizophrenia | NA | GAD | Detail | |
| 0.002 | Tobacco use disorder | NA | GAD | Detail | |
| 0.003 | tuberculosis | NA | BeFree,GAD | Detail | |
| <0.001 | Tumor Progression | NA | BeFree | Detail | |
| <0.001 | Gastrointestinal Stromal Tumors | NA | BeFree | Detail | |
| <0.001 | Indeterminate colitis | NA | BeFree | Detail | |
| <0.001 | Renal carnitine transport defect | NA | BeFree | Detail | |
| <0.001 | Arthritis, Collagen-Induced | NA | BeFree | Detail | |
| <0.001 | Carnitine deficiency | NA | BeFree | Detail | |
| <0.001 | Inflammatory disorder | NA | BeFree | Detail | |
| 0.003 | colorectal cancer | NA | BeFree,GAD | Detail | |
| 0.122 | Fibrinogen Adverse Event | NA | GAD,GWASCAT | Detail | |
| <0.001 | inflammatory bowel disease 5 | NA | BeFree | Detail | |
| 0.002 | Chronic ulcerative colitis | NA | GAD | Detail | |
| 0.122 | Fibrinogen Adverse Event | [A genome-wide survey of the human genome identifies novel loci related to commo... | GAD | 20031577 | Detail |
| <0.001 | arthritis | NA | BeFree | Detail | |
| 0.002 | Arthritis, Psoriatic | NA | GAD | Detail | |
| 0.280 | rheumatoid arthritis | Meta-analysis of SLC22A4 and RUNX1 polymorphisms : Associations with rheumatoid ... | BeFree,CLINVAR,CTD_human,GAD,LHGDN | 24972750 | Detail |
| 0.280 | rheumatoid arthritis | Single nucleotide polymorphisms (SNPs) of Solute carrier family 22, member 4 (SL... | BeFree,CLINVAR,CTD_human,GAD,LHGDN | 26329403 | Detail |
| 0.002 | Autoimmune Diseases | Single nucleotide polymorphisms (SNPs) of Solute carrier family 22, member 4 (SL... | BeFree | 26329403 | Detail |
| <0.001 | Behcet Syndrome | NA | BeFree | Detail | |
| 0.002 | Bronchiolitis, Viral | NA | GAD | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| Single nucleotide polymorphisms (SNPs) of Solute carrier family 22, member 4 (SLC22A4) have been sho... | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| The effect of turmeric (Curcuma longa) extract on the functionality of the solute carrier protein 22... | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| Novel loci, including those related to Crohn disease, psoriasis, and inflammation, identified in a g... | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| [A genome-wide survey of the human genome identifies novel loci related to common chronic inflammato... | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| Meta-analysis of SLC22A4 and RUNX1 polymorphisms : Associations with rheumatoid arthritis susceptibi... | DisGeNET | Detail |
| Single nucleotide polymorphisms (SNPs) of Solute carrier family 22, member 4 (SLC22A4) have been sho... | DisGeNET | Detail |
| Single nucleotide polymorphisms (SNPs) of Solute carrier family 22, member 4 (SLC22A4) have been sho... | DisGeNET | Detail |
| NA | DisGeNET | Detail |
| NA | DisGeNET | Detail |
Overlapped Transcript Coordinates
| Gene | Transcript ID | Exon Number | Chromosome | Start | Stop | Type | Amino Mutation | Transcript Position | Links |
|---|
Overlapped Transcript
| Gene | Transcript ID | Chromosome | Start | Stop | Links |
|---|
- Gene
- -
- dbSNP
- rs10479002 dbSNP
- Genome
- hg38
- Position
- chr5:132,294,394-132,344,190
- Variant Type
- snv
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