chr9:74634466:C>T Detail (hg38) (RORB)

Information

Genome

Assembly Position
hg19 chr9:77,249,382-77,249,382 View the variant detail on this assembly version.
hg38 chr9:74,634,466-74,634,466

HGVS

Type Transcript Protein
RefSeq NM_006914.3:c.94-165C>T
Ensemble ENST00000376896.8:c.94-165C>T
ENST00000396204.2:c.127-165C>T
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:0.539
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Type Database ID Link
Gene MIM 601972 OMIM
HGNC 10259 HGNC
Ensembl ENSG00000198963 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar tgv36426293 TogoVar
COSMIC
MONDO
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
<0.001 breast carcinoma After applying FPRP and BFDP in women with at least four night shifts, an increa... BeFree 23822714 Detail
<0.001 Malignant neoplasm of breast After applying FPRP and BFDP in women with at least four night shifts, an increa... BeFree 23822714 Detail
<0.001 Malignant neoplasm of breast In women with three consecutive night shifts, a reduced risk of breast cancer wa... BeFree 23822714 Detail
0.002 breast carcinoma In women with three consecutive night shifts, a reduced risk of breast cancer wa... BeFree 23822714 Detail
0.001 breast carcinoma In women with three consecutive night shifts, a reduced risk of breast cancer wa... BeFree 23822714 Detail
<0.001 breast carcinoma In women with three consecutive night shifts, a reduced risk of breast cancer wa... BeFree 23822714 Detail
0.002 breast carcinoma In women with three consecutive night shifts, a reduced risk of breast cancer wa... BeFree 23822714 Detail
0.003 Malignant neoplasm of breast In women with three consecutive night shifts, a reduced risk of breast cancer wa... BeFree 23822714 Detail
0.009 Malignant neoplasm of breast In women with three consecutive night shifts, a reduced risk of breast cancer wa... BeFree 23822714 Detail
0.002 breast carcinoma In women with three consecutive night shifts, a reduced risk of breast cancer wa... BeFree 23822714 Detail
0.002 Malignant neoplasm of breast In women with three consecutive night shifts, a reduced risk of breast cancer wa... BeFree 23822714 Detail
0.003 breast carcinoma In women with three consecutive night shifts, a reduced risk of breast cancer wa... BeFree 23822714 Detail
0.002 Malignant neoplasm of breast In women with three consecutive night shifts, a reduced risk of breast cancer wa... BeFree 23822714 Detail
0.001 Malignant neoplasm of breast In women with three consecutive night shifts, a reduced risk of breast cancer wa... BeFree 23822714 Detail
0.015 bipolar disorder The findings that have gained support indicate that genetic variants of RORA (rs... BeFree 22538398 Detail
0.005 bipolar disorder The findings that have gained support indicate that genetic variants of RORA (rs... BeFree 22538398 Detail
<0.001 seasonal affective disorder The findings that have gained support indicate that genetic variants of RORA (rs... BeFree 22538398 Detail
0.001 winter depression The findings that have gained support indicate that genetic variants of RORA (rs... BeFree 22538398 Detail
<0.001 depressive disorder The findings that have gained support indicate that genetic variants of RORA (rs... BeFree 22538398 Detail
0.008 bipolar disorder The findings that have gained support indicate that genetic variants of RORA (rs... BeFree 22538398 Detail
0.004 seasonal affective disorder The findings that have gained support indicate that genetic variants of RORA (rs... BeFree 22538398 Detail
<0.001 depressive disorder The findings that have gained support indicate that genetic variants of RORA (rs... BeFree 22538398 Detail
<0.001 seasonal affective disorder The findings that have gained support indicate that genetic variants of RORA (rs... BeFree 22538398 Detail
<0.001 winter depression The findings that have gained support indicate that genetic variants of RORA (rs... BeFree 22538398 Detail
<0.001 winter depression The findings that have gained support indicate that genetic variants of RORA (rs... BeFree 22538398 Detail
0.006 bipolar disorder The findings that have gained support indicate that genetic variants of RORA (rs... BeFree 22538398 Detail
<0.001 winter depression The findings that have gained support indicate that genetic variants of RORA (rs... BeFree 22538398 Detail
<0.001 winter depression The findings that have gained support indicate that genetic variants of RORA (rs... BeFree 22538398 Detail
<0.001 winter depression The findings that have gained support indicate that genetic variants of RORA (rs... BeFree 22538398 Detail
Annotation

Annotations

DescrptionSourceLinks
After applying FPRP and BFDP in women with at least four night shifts, an increased risk of breast c... DisGeNET Detail
After applying FPRP and BFDP in women with at least four night shifts, an increased risk of breast c... DisGeNET Detail
In women with three consecutive night shifts, a reduced risk of breast cancer was associated with ca... DisGeNET Detail
In women with three consecutive night shifts, a reduced risk of breast cancer was associated with ca... DisGeNET Detail
In women with three consecutive night shifts, a reduced risk of breast cancer was associated with ca... DisGeNET Detail
In women with three consecutive night shifts, a reduced risk of breast cancer was associated with ca... DisGeNET Detail
In women with three consecutive night shifts, a reduced risk of breast cancer was associated with ca... DisGeNET Detail
In women with three consecutive night shifts, a reduced risk of breast cancer was associated with ca... DisGeNET Detail
In women with three consecutive night shifts, a reduced risk of breast cancer was associated with ca... DisGeNET Detail
In women with three consecutive night shifts, a reduced risk of breast cancer was associated with ca... DisGeNET Detail
In women with three consecutive night shifts, a reduced risk of breast cancer was associated with ca... DisGeNET Detail
In women with three consecutive night shifts, a reduced risk of breast cancer was associated with ca... DisGeNET Detail
In women with three consecutive night shifts, a reduced risk of breast cancer was associated with ca... DisGeNET Detail
In women with three consecutive night shifts, a reduced risk of breast cancer was associated with ca... DisGeNET Detail
The findings that have gained support indicate that genetic variants of RORA (rs2028122) and CRY1 (r... DisGeNET Detail
The findings that have gained support indicate that genetic variants of RORA (rs2028122) and CRY1 (r... DisGeNET Detail
The findings that have gained support indicate that genetic variants of RORA (rs2028122) and CRY1 (r... DisGeNET Detail
The findings that have gained support indicate that genetic variants of RORA (rs2028122) and CRY1 (r... DisGeNET Detail
The findings that have gained support indicate that genetic variants of RORA (rs2028122) and CRY1 (r... DisGeNET Detail
The findings that have gained support indicate that genetic variants of RORA (rs2028122) and CRY1 (r... DisGeNET Detail
The findings that have gained support indicate that genetic variants of RORA (rs2028122) and CRY1 (r... DisGeNET Detail
The findings that have gained support indicate that genetic variants of RORA (rs2028122) and CRY1 (r... DisGeNET Detail
The findings that have gained support indicate that genetic variants of RORA (rs2028122) and CRY1 (r... DisGeNET Detail
The findings that have gained support indicate that genetic variants of RORA (rs2028122) and CRY1 (r... DisGeNET Detail
The findings that have gained support indicate that genetic variants of RORA (rs2028122) and CRY1 (r... DisGeNET Detail
The findings that have gained support indicate that genetic variants of RORA (rs2028122) and CRY1 (r... DisGeNET Detail
The findings that have gained support indicate that genetic variants of RORA (rs2028122) and CRY1 (r... DisGeNET Detail
The findings that have gained support indicate that genetic variants of RORA (rs2028122) and CRY1 (r... DisGeNET Detail
The findings that have gained support indicate that genetic variants of RORA (rs2028122) and CRY1 (r... DisGeNET Detail

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs3750420 dbSNP
Genome
hg38
Position
chr9:74,634,466-74,634,466
Variant Type
snv
Reference Allele
C
Alternative Allele
T
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs3750420
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.5392
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
9037
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16760
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