chr16:2087897:C>T Detail (hg38) (TSC2)

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Summary
Information
Links
Disease area statistics
MGeND
ClinVar
CIViC
DisGeNET
Annotation
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Information

Genome

Assembly	Position
hg19	chr16:2,137,898-2,137,898 View the variant detail on this assembly version.
hg38	chr16:2,087,897-2,087,897

HGVS

TSC2

Type	Transcript	Protein
RefSeq	NM_000548.4:c.5024C>T	NP_000539.2:p.Pro1675Leu
	NM_001114382.2:c.4955C>T	NP_001107854.1:p.Pro1652Leu
	NM_001318829.1:c.4679C>T	NP_001305758.1:p.Pro1560Leu
	NM_001077183.2:c.4823C>T	NP_001070651.1:p.Pro1608Leu
	NM_001318827.1:c.4715C>T	NP_001305756.1:p.Pro1572Leu
	NM_001318831.1:c.4715C>T	NP_001305760.1:p.Pro1572Leu
	NM_001318832.1:c.4856C>T	NP_001305761.1:p.Pro1619Leu
Ensemble	ENST00000219476.9:c.5024C>T	ENST00000219476.9:p.Pro1675Leu
	ENST00000350773.9:c.4955C>T	ENST00000350773.9:p.Pro1652Leu
	ENST00000382538.10:c.4679C>T	ENST00000382538.10:p.Pro1560Leu
	ENST00000401874.7:c.4823C>T	ENST00000401874.7:p.Pro1608Leu
	ENST00000439673.6:c.4715C>T	ENST00000439673.6:p.Pro1572Leu
	ENST00000568454.6:c.4856C>T	ENST00000568454.6:p.Pro1619Leu
	ENST00000642206.2:c.4871C>T	ENST00000642206.2:p.Pro1624Leu
	ENST00000642365.2:c.5021C>T	ENST00000642365.2:p.Pro1674Leu
	ENST00000642561.1:c.4895C>T	ENST00000642561.1:p.Pro1632Leu
	ENST00000642797.1:c.4826C>T	ENST00000642797.1:p.Pro1609Leu
	ENST00000642936.1:c.4892C>T	ENST00000642936.1:p.Pro1631Leu
	ENST00000643088.1:c.4817C>T	ENST00000643088.1:p.Pro1606Leu
	ENST00000643946.1:c.4949C>T	ENST00000643946.1:p.Pro1650Leu
	ENST00000644043.1:c.4895C>T	ENST00000644043.1:p.Pro1632Leu
	ENST00000644329.1:c.4823C>T	ENST00000644329.1:p.Pro1608Leu
	ENST00000644335.1:c.4820C>T	ENST00000644335.1:p.Pro1607Leu
	ENST00000645186.2:c.5114C>T	ENST00000645186.2:p.Pro1705Leu
	ENST00000646388.1:c.5018C>T	ENST00000646388.1:p.Pro1673Leu

Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics	Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance	Conflicting classifications of pathogenicity
Review star
Show details

Links

TSC2

Type	Database	ID	Link
Gene	MIM	191092	OMIM
	HGNC	12363	HGNC
	Ensembl	ENSG00000103197	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar
	COSMIC	COSM1636649	COSMIC
	MONDO

Disease area statistics

[No Data.]

MGeND

[No Data.]

ClinVar

Clinical significance	Last evaluated	Review status	Condition	Origin	Links
Conflicting interpretations of pathogenicity	2024-04-04	criteria provided, conflicting interpretations	tuberous sclerosis 2	germline	Detail
not provided		no assertion provided	Tuberous sclerosis syndrome	germline	Detail
not provided		no assertion provided	Lymphangiomyomatosis	germline	Detail
Pathogenic	2023-12-01	criteria provided, multiple submitters, no conflicts	not provided	de novo germline unknown	Detail
Pathogenic	2023-03-08	criteria provided, single submitter	Hereditary cancer-predisposing syndrome	germline	Detail
Pathogenic	2021-09-28	criteria provided, single submitter	Lymphangiomyomatosis,tuberous sclerosis 2,Isolated focal cortical dysplasia type II	unknown	Detail
Pathogenic	2021-09-28	criteria provided, single submitter	Lymphangiomyomatosis,tuberous sclerosis 2,Isolated focal cortical dysplasia type II	unknown	Detail
Pathogenic	2021-09-28	criteria provided, single submitter	Lymphangiomyomatosis,tuberous sclerosis 2,Isolated focal cortical dysplasia type II	unknown	Detail

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.441	TUBEROUS SCLEROSIS 2 (disorder)	NA	CLINVAR		Detail
0.494	tuberous sclerosis	NA	CLINVAR		Detail
0.577	lymphangioleiomyomatosis	NA	CLINVAR		Detail

Annotation

Annotations

Descrption	Source	Links
NM_000548.5(TSC2):c.5024C>T (p.Pro1675Leu) AND Tuberous sclerosis 2	ClinVar	Detail
NM_000548.5(TSC2):c.5024C>T (p.Pro1675Leu) AND Tuberous sclerosis syndrome	ClinVar	Detail
NM_000548.5(TSC2):c.5024C>T (p.Pro1675Leu) AND Lymphangiomyomatosis	ClinVar	Detail
NM_000548.5(TSC2):c.5024C>T (p.Pro1675Leu) AND not provided	ClinVar	Detail
NM_000548.5(TSC2):c.5024C>T (p.Pro1675Leu) AND Hereditary cancer-predisposing syndrome	ClinVar	Detail
NM_000548.5(TSC2):c.5024C>T (p.Pro1675Leu) AND multiple conditions	ClinVar	Detail
NM_000548.5(TSC2):c.5024C>T (p.Pro1675Leu) AND multiple conditions	ClinVar	Detail
NM_000548.5(TSC2):c.5024C>T (p.Pro1675Leu) AND multiple conditions	ClinVar	Detail
NA	DisGeNET	Detail
NA	DisGeNET	Detail
NA	DisGeNET	Detail

Overlapped Transcript Coordinates

Gene	Transcript ID	Exon Number	Chromosome	Start	Stop	Type	Amino Mutation	Transcript Position	Links

Overlapped Transcript

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs45483392 dbSNP
Genome: hg38
Position: chr16:2,087,897-2,087,897
Variant Type: snv
Reference Allele: C
Alternative Allele: T

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