chr12:102912842:G>C Detail (hg38) (PAH)

Information

Genome

Assembly Position
hg19 chr12:103,306,620-103,306,620 View the variant detail on this assembly version.
hg38 chr12:102,912,842-102,912,842

HGVS

Type Transcript Protein
RefSeq NM_000277.1:c.117C>G NP_000268.1:p.Phe39Leu
Ensemble ENST00000307000.7:c.102C>G ENST00000307000.7:p.Phe34Leu
ENST00000553106.6:c.117C>G ENST00000553106.6:p.Phe39Leu
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:[No Data.]
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:<0.001

Prediction

ClinVar

Clinical Significance Pathogenic
Review star
Show details
Links
Type Database ID Link
Gene MIM 612349 OMIM
HGNC 8582 HGNC
Ensembl ENSG00000171759 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar
COSMIC
MONDO
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
Clinical significance Last evaluated Review status Condition Origin Links
Pathogenic 2020-03-27 reviewed by expert panel phenylketonuria germline unknown Detail
Pathogenic 2024-04-01 criteria provided, multiple submitters, no conflicts not provided germline not provided Detail
Pathogenic 2024-01-02 criteria provided, single submitter PAH-related disorder germline Detail
Pathogenic 2023-12-06 criteria provided, single submitter Inborn genetic diseases germline Detail
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.375 Phenylketonurias NA CLINVAR Detail
0.152 Hyperphenylalaninaemia The F39L, L48S, and I65T PAH mutations were selected because each is associated ... BeFree 10720436 Detail
0.389 Classical phenylketonuria We have used the fluorescent multiplex ARMS method for the identification of com... BeFree 8808316 Detail
0.375 Phenylketonurias We have used the fluorescent multiplex ARMS method for the identification of com... BeFree 8808316 Detail
Annotation

Annotations

DescrptionSourceLinks
NM_000277.3(PAH):c.117C>G (p.Phe39Leu) AND Phenylketonuria ClinVar Detail
NM_000277.3(PAH):c.117C>G (p.Phe39Leu) AND not provided ClinVar Detail
NM_000277.3(PAH):c.117C>G (p.Phe39Leu) AND PAH-related disorder ClinVar Detail
NM_000277.3(PAH):c.117C>G (p.Phe39Leu) AND Inborn genetic diseases ClinVar Detail
NA DisGeNET Detail
The F39L, L48S, and I65T PAH mutations were selected because each is associated with a spectrum of i... DisGeNET Detail
We have used the fluorescent multiplex ARMS method for the identification of common phenylketonuria ... DisGeNET Detail
We have used the fluorescent multiplex ARMS method for the identification of common phenylketonuria ... DisGeNET Detail

Overlapped Transcript Coordinates

Gene Transcript ID Exon Number Chromosome Start Stop Type Amino Mutation Transcript Position Links

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs62642926 dbSNP
Genome
hg38
Position
chr12:102,912,842-102,912,842
Variant Type
snv
Reference Allele
G
Alternative Allele
C
East Asian Chromosome Counts (ExAC)
8654
East Asian Allele Counts (ExAC)
0
East Asian Heterozygous Counts (ExAC)
0
East Asian Homozygous Counts (ExAC)
0
East Asian Allele Frequency (ExAC)
0.0
Chromosome Counts in All Race (ExAC)
121396
Allele Counts in All Race (ExAC)
11
Heterozygous Counts in All Race (ExAC)
11
Homozygous Counts in All Race (ExAC)
0
Allele Frequency in All Race (ExAC)
9.061254077564335E-5
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