chr10:8659256:G>A Detail (hg38)

Information

Genome

Assembly Position
hg19 chr10:8,701,219-8,701,219 View the variant detail on this assembly version.
hg38 chr10:8,659,256-8,659,256

HGVS

[No Data.]
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:0.420
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
<0.001 colorectal carcinoma We observed an association between the low colorectal cancer risk allele (A) for... BeFree 22363440 Detail
0.121 colorectal cancer We found that rs10795668 in FLJ3802842 and rs4631962 in CCND2 were significantly... BeFree 24968322 Detail
0.009 colorectal carcinoma Among the European CRC-susceptibility SNPs, rs4939827 in SMAD7 was associated wi... BeFree 23875689 Detail
<0.001 colorectal cancer We observed an association between the low colorectal cancer risk allele (A) for... BeFree 22363440 Detail
<0.001 colorectal cancer We observed an association between the low colorectal cancer risk allele (A) for... BeFree 22363440 Detail
<0.001 colorectal carcinoma We observed an association between the low colorectal cancer risk allele (A) for... BeFree 22363440 Detail
0.162 colorectal cancer Among the European CRC-susceptibility SNPs, rs4939827 in SMAD7 was associated wi... BeFree 23875689 Detail
<0.001 colorectal carcinoma We found that rs10795668 in FLJ3802842 and rs4631962 in CCND2 were significantly... BeFree 24968322 Detail
<0.001 colorectal carcinoma In addition to the previously reported 8q24, 15q13 and 18q21 CRC risk loci, we i... BeFree 18372905 Detail
0.010 colorectal cancer In addition to the previously reported 8q24, 15q13 and 18q21 CRC risk loci, we i... BeFree 18372905 Detail
0.014 Malignant tumor of colon A total of 927 MMR gene mutation carriers (360 MLH1, 442 MSH2, 85 MSH6 and 40 PM... BeFree 23434150 Detail
0.009 colorectal carcinoma We used meta-analysis of an efficient empirical-Bayes estimator to detect potent... BeFree 22367214 Detail
0.013 colorectal cancer We used meta-analysis of an efficient empirical-Bayes estimator to detect potent... BeFree 22367214 Detail
0.003 colon carcinoma A total of 927 MMR gene mutation carriers (360 MLH1, 442 MSH2, 85 MSH6 and 40 PM... BeFree 23434150 Detail
0.006 Malignant tumor of colon A total of 927 MMR gene mutation carriers (360 MLH1, 442 MSH2, 85 MSH6 and 40 PM... BeFree 23434150 Detail
0.008 colorectal carcinoma We used meta-analysis of an efficient empirical-Bayes estimator to detect potent... BeFree 22367214 Detail
0.010 colorectal cancer We used meta-analysis of an efficient empirical-Bayes estimator to detect potent... BeFree 22367214 Detail
0.004 colorectal carcinoma We used meta-analysis of an efficient empirical-Bayes estimator to detect potent... BeFree 22367214 Detail
0.126 colorectal cancer We used meta-analysis of an efficient empirical-Bayes estimator to detect potent... BeFree 22367214 Detail
0.004 Malignant tumor of colon A total of 927 MMR gene mutation carriers (360 MLH1, 442 MSH2, 85 MSH6 and 40 PM... BeFree 23434150 Detail
0.162 colorectal cancer We used meta-analysis of an efficient empirical-Bayes estimator to detect potent... BeFree 22367214 Detail
0.004 colorectal cancer We used meta-analysis of an efficient empirical-Bayes estimator to detect potent... BeFree 22367214 Detail
0.003 colorectal carcinoma We used meta-analysis of an efficient empirical-Bayes estimator to detect potent... BeFree 22367214 Detail
<0.001 colorectal carcinoma We used meta-analysis of an efficient empirical-Bayes estimator to detect potent... BeFree 22367214 Detail
0.005 colon carcinoma A total of 927 MMR gene mutation carriers (360 MLH1, 442 MSH2, 85 MSH6 and 40 PM... BeFree 23434150 Detail
0.011 colon carcinoma A total of 927 MMR gene mutation carriers (360 MLH1, 442 MSH2, 85 MSH6 and 40 PM... BeFree 23434150 Detail
0.171 colorectal cancer We used meta-analysis of an efficient empirical-Bayes estimator to detect potent... BeFree 22367214 Detail
0.002 colorectal carcinoma We used meta-analysis of an efficient empirical-Bayes estimator to detect potent... BeFree 22367214 Detail
Annotation

Annotations

DescrptionSourceLinks
We observed an association between the low colorectal cancer risk allele (A) for rs10795668 at 10p14... DisGeNET Detail
We found that rs10795668 in FLJ3802842 and rs4631962 in CCND2 were significantly associated with CRC... DisGeNET Detail
Among the European CRC-susceptibility SNPs, rs4939827 in SMAD7 was associated with a significant dec... DisGeNET Detail
We observed an association between the low colorectal cancer risk allele (A) for rs10795668 at 10p14... DisGeNET Detail
We observed an association between the low colorectal cancer risk allele (A) for rs10795668 at 10p14... DisGeNET Detail
We observed an association between the low colorectal cancer risk allele (A) for rs10795668 at 10p14... DisGeNET Detail
Among the European CRC-susceptibility SNPs, rs4939827 in SMAD7 was associated with a significant dec... DisGeNET Detail
We found that rs10795668 in FLJ3802842 and rs4631962 in CCND2 were significantly associated with CRC... DisGeNET Detail
In addition to the previously reported 8q24, 15q13 and 18q21 CRC risk loci, we identified two previo... DisGeNET Detail
In addition to the previously reported 8q24, 15q13 and 18q21 CRC risk loci, we identified two previo... DisGeNET Detail
A total of 927 MMR gene mutation carriers (360 MLH1, 442 MSH2, 85 MSH6 and 40 PMS2) from 315 familie... DisGeNET Detail
We used meta-analysis of an efficient empirical-Bayes estimator to detect potential multiplicative i... DisGeNET Detail
We used meta-analysis of an efficient empirical-Bayes estimator to detect potential multiplicative i... DisGeNET Detail
A total of 927 MMR gene mutation carriers (360 MLH1, 442 MSH2, 85 MSH6 and 40 PMS2) from 315 familie... DisGeNET Detail
A total of 927 MMR gene mutation carriers (360 MLH1, 442 MSH2, 85 MSH6 and 40 PMS2) from 315 familie... DisGeNET Detail
We used meta-analysis of an efficient empirical-Bayes estimator to detect potential multiplicative i... DisGeNET Detail
We used meta-analysis of an efficient empirical-Bayes estimator to detect potential multiplicative i... DisGeNET Detail
We used meta-analysis of an efficient empirical-Bayes estimator to detect potential multiplicative i... DisGeNET Detail
We used meta-analysis of an efficient empirical-Bayes estimator to detect potential multiplicative i... DisGeNET Detail
A total of 927 MMR gene mutation carriers (360 MLH1, 442 MSH2, 85 MSH6 and 40 PMS2) from 315 familie... DisGeNET Detail
We used meta-analysis of an efficient empirical-Bayes estimator to detect potential multiplicative i... DisGeNET Detail
We used meta-analysis of an efficient empirical-Bayes estimator to detect potential multiplicative i... DisGeNET Detail
We used meta-analysis of an efficient empirical-Bayes estimator to detect potential multiplicative i... DisGeNET Detail
We used meta-analysis of an efficient empirical-Bayes estimator to detect potential multiplicative i... DisGeNET Detail
A total of 927 MMR gene mutation carriers (360 MLH1, 442 MSH2, 85 MSH6 and 40 PMS2) from 315 familie... DisGeNET Detail
A total of 927 MMR gene mutation carriers (360 MLH1, 442 MSH2, 85 MSH6 and 40 PMS2) from 315 familie... DisGeNET Detail
We used meta-analysis of an efficient empirical-Bayes estimator to detect potential multiplicative i... DisGeNET Detail
We used meta-analysis of an efficient empirical-Bayes estimator to detect potential multiplicative i... DisGeNET Detail
Gene
-
dbSNP
rs10795668 dbSNP
Genome
hg38
Position
chr10:8,659,256-8,659,256
Variant Type
snv
Reference Allele
G
Alternative Allele
A
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs10795668
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.4196
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
7033
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16760
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