chr9:77238860:T>C Detail (hg19) (RORB)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr9:77,238,860-77,238,860 |
| hg38 | chr9:74,623,944-74,623,944 View the variant detail on this assembly version. |
HGVS
| Type | Transcript | Protein |
|---|---|---|
| RefSeq | NM_006914.3:c.8-6338T>C | |
| Ensemble | ENST00000376896.8:c.8-6338T>C | |
| ENST00000396204.2:c.41-6338T>C |
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.952 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| 0.015 | bipolar disorder | The findings that have gained support indicate that genetic variants of RORA (rs... | BeFree | 22538398 | Detail |
| 0.005 | bipolar disorder | The findings that have gained support indicate that genetic variants of RORA (rs... | BeFree | 22538398 | Detail |
| <0.001 | seasonal affective disorder | The findings that have gained support indicate that genetic variants of RORA (rs... | BeFree | 22538398 | Detail |
| 0.001 | winter depression | The findings that have gained support indicate that genetic variants of RORA (rs... | BeFree | 22538398 | Detail |
| <0.001 | depressive disorder | The findings that have gained support indicate that genetic variants of RORA (rs... | BeFree | 22538398 | Detail |
| 0.008 | bipolar disorder | The findings that have gained support indicate that genetic variants of RORA (rs... | BeFree | 22538398 | Detail |
| 0.004 | seasonal affective disorder | The findings that have gained support indicate that genetic variants of RORA (rs... | BeFree | 22538398 | Detail |
| <0.001 | depressive disorder | The findings that have gained support indicate that genetic variants of RORA (rs... | BeFree | 22538398 | Detail |
| <0.001 | seasonal affective disorder | The findings that have gained support indicate that genetic variants of RORA (rs... | BeFree | 22538398 | Detail |
| <0.001 | winter depression | The findings that have gained support indicate that genetic variants of RORA (rs... | BeFree | 22538398 | Detail |
| <0.001 | winter depression | The findings that have gained support indicate that genetic variants of RORA (rs... | BeFree | 22538398 | Detail |
| 0.006 | bipolar disorder | The findings that have gained support indicate that genetic variants of RORA (rs... | BeFree | 22538398 | Detail |
| <0.001 | winter depression | The findings that have gained support indicate that genetic variants of RORA (rs... | BeFree | 22538398 | Detail |
| <0.001 | winter depression | The findings that have gained support indicate that genetic variants of RORA (rs... | BeFree | 22538398 | Detail |
| <0.001 | winter depression | The findings that have gained support indicate that genetic variants of RORA (rs... | BeFree | 22538398 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| The findings that have gained support indicate that genetic variants of RORA (rs2028122) and CRY1 (r... | DisGeNET | Detail |
| The findings that have gained support indicate that genetic variants of RORA (rs2028122) and CRY1 (r... | DisGeNET | Detail |
| The findings that have gained support indicate that genetic variants of RORA (rs2028122) and CRY1 (r... | DisGeNET | Detail |
| The findings that have gained support indicate that genetic variants of RORA (rs2028122) and CRY1 (r... | DisGeNET | Detail |
| The findings that have gained support indicate that genetic variants of RORA (rs2028122) and CRY1 (r... | DisGeNET | Detail |
| The findings that have gained support indicate that genetic variants of RORA (rs2028122) and CRY1 (r... | DisGeNET | Detail |
| The findings that have gained support indicate that genetic variants of RORA (rs2028122) and CRY1 (r... | DisGeNET | Detail |
| The findings that have gained support indicate that genetic variants of RORA (rs2028122) and CRY1 (r... | DisGeNET | Detail |
| The findings that have gained support indicate that genetic variants of RORA (rs2028122) and CRY1 (r... | DisGeNET | Detail |
| The findings that have gained support indicate that genetic variants of RORA (rs2028122) and CRY1 (r... | DisGeNET | Detail |
| The findings that have gained support indicate that genetic variants of RORA (rs2028122) and CRY1 (r... | DisGeNET | Detail |
| The findings that have gained support indicate that genetic variants of RORA (rs2028122) and CRY1 (r... | DisGeNET | Detail |
| The findings that have gained support indicate that genetic variants of RORA (rs2028122) and CRY1 (r... | DisGeNET | Detail |
| The findings that have gained support indicate that genetic variants of RORA (rs2028122) and CRY1 (r... | DisGeNET | Detail |
| The findings that have gained support indicate that genetic variants of RORA (rs2028122) and CRY1 (r... | DisGeNET | Detail |
Overlapped Transcript
| Gene | Transcript ID | Chromosome | Start | Stop | Links |
|---|
- Gene
- -
- dbSNP
- rs1157358 dbSNP
- Genome
- hg19
- Position
- chr9:77,238,860-77,238,860
- Variant Type
- snv
- Reference Allele
- T
- Alternative Allele
- C
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs1157358
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.9525
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 15964
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
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