chr6:78173281:T>A Detail (hg19)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr6:78,173,281-78,173,281 |
| hg38 | chr6:77,463,564-77,463,564 View the variant detail on this assembly version. |
HGVS
[No Data.]
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.058 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| 0.011 | Unipolar Depression | Six polymorphisms in four genes related to the serotonin system, including the H... | BeFree | 19897250 | Detail |
| 0.040 | major depressive disorder | Six polymorphisms in four genes related to the serotonin system, including the H... | BeFree | 19897250 | Detail |
| 0.233 | major depressive disorder | Six polymorphisms in four genes related to the serotonin system, including the H... | BeFree | 19897250 | Detail |
| 0.011 | Unipolar Depression | Six polymorphisms in four genes related to the serotonin system, including the H... | BeFree | 19897250 | Detail |
| 0.155 | major depressive disorder | Six polymorphisms in four genes related to the serotonin system, including the H... | BeFree | 19897250 | Detail |
| 0.038 | Unipolar Depression | Six polymorphisms in four genes related to the serotonin system, including the H... | BeFree | 19897250 | Detail |
| 0.004 | major depressive disorder | Our findings suggest that 5-HT1B A-161T genetic polymorphism does not play a maj... | BeFree | 15365222 | Detail |
| 0.001 | Headache | Genomic DNA of a relatively small but very well-characterized set of migraine pa... | BeFree | 17501853 | Detail |
| 0.001 | Antisocial behavior | However, 5HT1B gene A-161T polymorphisms might be one of the common genetic fact... | BeFree | 19519719 | Detail |
| 0.004 | Unipolar Depression | Our findings suggest that 5-HT1B A-161T genetic polymorphism does not play a maj... | BeFree | 15365222 | Detail |
| 0.002 | Antisocial behavior | However, 5HT1B gene A-161T polymorphisms might be one of the common genetic fact... | BeFree | 19519719 | Detail |
| 0.021 | Alcoholic Intoxication, Chronic | The relationship between serotonin receptor 1B polymorphisms A-161T and alcohol ... | BeFree | 19519719 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| Six polymorphisms in four genes related to the serotonin system, including the HTTLPR and HTTVNTR in... | DisGeNET | Detail |
| Six polymorphisms in four genes related to the serotonin system, including the HTTLPR and HTTVNTR in... | DisGeNET | Detail |
| Six polymorphisms in four genes related to the serotonin system, including the HTTLPR and HTTVNTR in... | DisGeNET | Detail |
| Six polymorphisms in four genes related to the serotonin system, including the HTTLPR and HTTVNTR in... | DisGeNET | Detail |
| Six polymorphisms in four genes related to the serotonin system, including the HTTLPR and HTTVNTR in... | DisGeNET | Detail |
| Six polymorphisms in four genes related to the serotonin system, including the HTTLPR and HTTVNTR in... | DisGeNET | Detail |
| Our findings suggest that 5-HT1B A-161T genetic polymorphism does not play a major role in the susce... | DisGeNET | Detail |
| Genomic DNA of a relatively small but very well-characterized set of migraine patients with consiste... | DisGeNET | Detail |
| However, 5HT1B gene A-161T polymorphisms might be one of the common genetic factors between the ANX/... | DisGeNET | Detail |
| Our findings suggest that 5-HT1B A-161T genetic polymorphism does not play a major role in the susce... | DisGeNET | Detail |
| However, 5HT1B gene A-161T polymorphisms might be one of the common genetic factors between the ANX/... | DisGeNET | Detail |
| The relationship between serotonin receptor 1B polymorphisms A-161T and alcohol dependence. | DisGeNET | Detail |
- Gene
- -
- dbSNP
- rs130058 dbSNP
- Genome
- hg19
- Position
- chr6:78,173,281-78,173,281
- Variant Type
- snv
- Reference Allele
- T
- Alternative Allele
- A
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs130058
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.0584
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 978
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
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