chr1:206939904:G>A Detail (hg19)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr1:206,939,904-206,939,904 |
| hg38 | chr1:206,766,559-206,766,559 View the variant detail on this assembly version. |
HGVS
[No Data.]
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.013 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| <0.001 | Drug usage | The polymorphisms IL10 C-592A (rs1800872), C-rs3024505-T, IL1b C-3737T (rs484830... | BeFree | 24194923 | Detail |
| 0.013 | colorectal cancer | The polymorphisms IL10 C-592A (rs1800872), C-rs3024505-T, IL1b C-3737T (rs484830... | BeFree | 24194923 | Detail |
| 0.006 | colorectal carcinoma | The polymorphisms IL10 C-592A (rs1800872), C-rs3024505-T, IL1b C-3737T (rs484830... | BeFree | 24194923 | Detail |
| 0.006 | colorectal carcinoma | We found indications that aspirin interacted with rs6983267 close to MYC (encodi... | BeFree | 24889212 | Detail |
| 0.013 | colorectal cancer | We found indications that aspirin interacted with rs6983267 close to MYC (encodi... | BeFree | 24889212 | Detail |
| 0.011 | colorectal cancer | We found indications that aspirin interacted with rs6983267 close to MYC (encodi... | BeFree | 24889212 | Detail |
| 0.012 | colorectal carcinoma | We found indications that aspirin interacted with rs6983267 close to MYC (encodi... | BeFree | 24889212 | Detail |
| 0.003 | ulcerative colitis | [Genome-wide association identifies multiple ulcerative colitis susceptibility l... | GAD | 20228799 | Detail |
| 0.295 | ulcerative colitis | The polymorphism rs3024505 proximal to IL-10 is associated with risk of ulcerati... | BeFree | 20509889 | Detail |
| 0.166 | Crohn Disease | [The polymorphism rs3024505 proximal to IL-10 is associated with risk of ulcerat... | GAD | 20509889 | Detail |
| 0.166 | Crohn Disease | The polymorphism rs3024505 proximal to IL-10 is associated with risk of ulcerati... | BeFree | 20509889 | Detail |
| 0.295 | ulcerative colitis | [The polymorphism rs3024505 proximal to IL-10 is associated with risk of ulcerat... | GAD | 20509889 | Detail |
| 0.295 | ulcerative colitis | Only one SNP, rs3024505 (Chr 1q32.1, upstream of IL10), was associated with susc... | BeFree | 23348120 | Detail |
| 0.295 | ulcerative colitis | [Sequence variants in IL10, ARPC2 and multiple other loci contribute to ulcerati... | GAD | 18836448 | Detail |
| 0.157 | Diabetes Mellitus, Insulin-Dependent | [Genome-wide association study and meta-analysis find that over 40 loci affect r... | GAD | 19430480 | Detail |
| 0.012 | ulcerative colitis | The polymorphisms TLR2 (rs1816702), NFKB1 (rs28362491), TNFRSF1A (rs4149570), IL... | BeFree | 24971461 | Detail |
| 0.008 | ulcerative colitis | The polymorphisms TLR2 (rs1816702), NFKB1 (rs28362491), TNFRSF1A (rs4149570), IL... | BeFree | 24971461 | Detail |
| 0.183 | Crohn Disease | The polymorphisms TLR2 (rs1816702), NFKB1 (rs28362491), TNFRSF1A (rs4149570), IL... | BeFree | 24971461 | Detail |
| 0.009 | ulcerative colitis | The polymorphisms TLR2 (rs1816702), NFKB1 (rs28362491), TNFRSF1A (rs4149570), IL... | BeFree | 24971461 | Detail |
| 0.013 | ulcerative colitis | The polymorphisms TLR2 (rs1816702), NFKB1 (rs28362491), TNFRSF1A (rs4149570), IL... | BeFree | 24971461 | Detail |
| 0.009 | Crohn Disease | The polymorphisms TLR2 (rs1816702), NFKB1 (rs28362491), TNFRSF1A (rs4149570), IL... | BeFree | 24971461 | Detail |
| <0.001 | ulcerative colitis | The polymorphisms TLR2 (rs1816702), NFKB1 (rs28362491), TNFRSF1A (rs4149570), IL... | BeFree | 24971461 | Detail |
| 0.327 | ulcerative colitis | The polymorphisms TLR2 (rs1816702), NFKB1 (rs28362491), TNFRSF1A (rs4149570), IL... | BeFree | 24971461 | Detail |
| 0.001 | ulcerative colitis | The polymorphisms TLR2 (rs1816702), NFKB1 (rs28362491), TNFRSF1A (rs4149570), IL... | BeFree | 24971461 | Detail |
| 0.009 | ulcerative colitis | The polymorphisms TLR2 (rs1816702), NFKB1 (rs28362491), TNFRSF1A (rs4149570), IL... | BeFree | 24971461 | Detail |
| 0.131 | ulcerative colitis | The polymorphisms TLR2 (rs1816702), NFKB1 (rs28362491), TNFRSF1A (rs4149570), IL... | BeFree | 24971461 | Detail |
| 0.126 | Crohn Disease | The polymorphisms TLR2 (rs1816702), NFKB1 (rs28362491), TNFRSF1A (rs4149570), IL... | BeFree | 24971461 | Detail |
| 0.295 | ulcerative colitis | The polymorphisms TLR2 (rs1816702), NFKB1 (rs28362491), TNFRSF1A (rs4149570), IL... | BeFree | 24971461 | Detail |
| 0.034 | ulcerative colitis | The polymorphisms TLR2 (rs1816702), NFKB1 (rs28362491), TNFRSF1A (rs4149570), IL... | BeFree | 24971461 | Detail |
| <0.001 | ulcerative colitis | The polymorphisms TLR2 (rs1816702), NFKB1 (rs28362491), TNFRSF1A (rs4149570), IL... | BeFree | 24971461 | Detail |
| 0.187 | ulcerative colitis | The polymorphisms TLR2 (rs1816702), NFKB1 (rs28362491), TNFRSF1A (rs4149570), IL... | BeFree | 24971461 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| The polymorphisms IL10 C-592A (rs1800872), C-rs3024505-T, IL1b C-3737T (rs4848306), G-1464C (rs11436... | DisGeNET | Detail |
| The polymorphisms IL10 C-592A (rs1800872), C-rs3024505-T, IL1b C-3737T (rs4848306), G-1464C (rs11436... | DisGeNET | Detail |
| The polymorphisms IL10 C-592A (rs1800872), C-rs3024505-T, IL1b C-3737T (rs4848306), G-1464C (rs11436... | DisGeNET | Detail |
| We found indications that aspirin interacted with rs6983267 close to MYC (encoding a transcription f... | DisGeNET | Detail |
| We found indications that aspirin interacted with rs6983267 close to MYC (encoding a transcription f... | DisGeNET | Detail |
| We found indications that aspirin interacted with rs6983267 close to MYC (encoding a transcription f... | DisGeNET | Detail |
| We found indications that aspirin interacted with rs6983267 close to MYC (encoding a transcription f... | DisGeNET | Detail |
| [Genome-wide association identifies multiple ulcerative colitis susceptibility loci.] | DisGeNET | Detail |
| The polymorphism rs3024505 proximal to IL-10 is associated with risk of ulcerative colitis and Crohn... | DisGeNET | Detail |
| [The polymorphism rs3024505 proximal to IL-10 is associated with risk of ulcerative colitis and Croh... | DisGeNET | Detail |
| The polymorphism rs3024505 proximal to IL-10 is associated with risk of ulcerative colitis and Crohn... | DisGeNET | Detail |
| [The polymorphism rs3024505 proximal to IL-10 is associated with risk of ulcerative colitis and Croh... | DisGeNET | Detail |
| Only one SNP, rs3024505 (Chr 1q32.1, upstream of IL10), was associated with susceptibility to UC. | DisGeNET | Detail |
| [Sequence variants in IL10, ARPC2 and multiple other loci contribute to ulcerative colitis susceptib... | DisGeNET | Detail |
| [Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabet... | DisGeNET | Detail |
| The polymorphisms TLR2 (rs1816702), NFKB1 (rs28362491), TNFRSF1A (rs4149570), IL6R (rs4537545), IL23... | DisGeNET | Detail |
| The polymorphisms TLR2 (rs1816702), NFKB1 (rs28362491), TNFRSF1A (rs4149570), IL6R (rs4537545), IL23... | DisGeNET | Detail |
| The polymorphisms TLR2 (rs1816702), NFKB1 (rs28362491), TNFRSF1A (rs4149570), IL6R (rs4537545), IL23... | DisGeNET | Detail |
| The polymorphisms TLR2 (rs1816702), NFKB1 (rs28362491), TNFRSF1A (rs4149570), IL6R (rs4537545), IL23... | DisGeNET | Detail |
| The polymorphisms TLR2 (rs1816702), NFKB1 (rs28362491), TNFRSF1A (rs4149570), IL6R (rs4537545), IL23... | DisGeNET | Detail |
| The polymorphisms TLR2 (rs1816702), NFKB1 (rs28362491), TNFRSF1A (rs4149570), IL6R (rs4537545), IL23... | DisGeNET | Detail |
| The polymorphisms TLR2 (rs1816702), NFKB1 (rs28362491), TNFRSF1A (rs4149570), IL6R (rs4537545), IL23... | DisGeNET | Detail |
| The polymorphisms TLR2 (rs1816702), NFKB1 (rs28362491), TNFRSF1A (rs4149570), IL6R (rs4537545), IL23... | DisGeNET | Detail |
| The polymorphisms TLR2 (rs1816702), NFKB1 (rs28362491), TNFRSF1A (rs4149570), IL6R (rs4537545), IL23... | DisGeNET | Detail |
| The polymorphisms TLR2 (rs1816702), NFKB1 (rs28362491), TNFRSF1A (rs4149570), IL6R (rs4537545), IL23... | DisGeNET | Detail |
| The polymorphisms TLR2 (rs1816702), NFKB1 (rs28362491), TNFRSF1A (rs4149570), IL6R (rs4537545), IL23... | DisGeNET | Detail |
| The polymorphisms TLR2 (rs1816702), NFKB1 (rs28362491), TNFRSF1A (rs4149570), IL6R (rs4537545), IL23... | DisGeNET | Detail |
| The polymorphisms TLR2 (rs1816702), NFKB1 (rs28362491), TNFRSF1A (rs4149570), IL6R (rs4537545), IL23... | DisGeNET | Detail |
| The polymorphisms TLR2 (rs1816702), NFKB1 (rs28362491), TNFRSF1A (rs4149570), IL6R (rs4537545), IL23... | DisGeNET | Detail |
| The polymorphisms TLR2 (rs1816702), NFKB1 (rs28362491), TNFRSF1A (rs4149570), IL6R (rs4537545), IL23... | DisGeNET | Detail |
| The polymorphisms TLR2 (rs1816702), NFKB1 (rs28362491), TNFRSF1A (rs4149570), IL6R (rs4537545), IL23... | DisGeNET | Detail |
- Gene
- -
- dbSNP
- rs3024505 dbSNP
- Genome
- hg19
- Position
- chr1:206,939,904-206,939,904
- Variant Type
- snv
- Reference Allele
- G
- Alternative Allele
- A
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs3024505
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.0131
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 220
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
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