SPATS2 spermatogenesis associated serine rich 2
Information
- Symbol
- SPATS2
- Type
- protein-coding
- Description
- spermatogenesis associated serine rich 2
- Entrez Gene ID
- 65244
- Genome
- hg19
- Position
- chr12:49,761,248-49,921,207
- Genome
- hg38
- Position
- chr12:49,367,465-49,527,424
- MIM
- 611667 OMIM
- HGNC
- HGNC:18650 HGNC
- Ensembl
- ENSG00000123352 Ensembl
- Links
- NCBI Gene Cards OncoKB
Clinical Significance
| MGeND | ClinVar | |
|---|---|---|
| Benign | 0 | 2 |
| not provided | 1 | 0 |
| Uncertain significance | 0 | 50 |
Ranking
| ClinVar | |
|---|---|
 |
0 |
 |
0 |
 |
0 |
 |
52 |
 |
0 |
Frequency
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
Disease area statistics
Locus Zoom
Variants
Search Word
| Target data | : |
MGeND data only
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| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
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| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
| Type | ID |
|---|---|
| SYNONYM | Nbla00526 |
| SYNONYM | P59SCR |
| SYNONYM | SCR59 |
| SYNONYM | SPATA10 |
| MIM | 611667 OMIM |
| HGNC | HGNC:18650 HGNC |
| Ensembl | ENSG00000123352 Ensembl |
| AllianceGenome | HGNC:18650 |
| Descrption | Source | Links |
|---|
| ID | Genome | Chromosome | Start | End | Length |
|---|---|---|---|---|---|
| ENST00000547865.5 | hg38 | chr12 | 49,367,547 | 49,463,625 | 96,079 |
| ENST00000553127.5 | hg38 | chr12 | 49,367,465 | 49,527,424 | 159,960 |
| ENST00000321898.10 | hg38 | chr12 | 49,367,475 | 49,527,419 | 159,945 |
| ENST00000552918.6 | hg38 | chr12 | 49,367,462 | 49,527,425 | 159,964 |
| ENST00000321898.10 | hg19 | chr12 | 49,761,258 | 49,921,202 | 159,945 |
| ENST00000547865.5 | hg19 | chr12 | 49,761,330 | 49,857,408 | 96,079 |
| ENST00000552918.6 | hg19 | chr12 | 49,761,245 | 49,921,208 | 159,964 |
| ENST00000553127.5 | hg19 | chr12 | 49,761,248 | 49,921,207 | 159,960 |
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