ENST00000553127.5 SPATS2

Information
Transcript ID
ENST00000553127.5
Genome
hg38
Position
chr12:49,367,465-49,527,424
Strand
+
CDS length
1,638
Amino acid length
546
Gene symbol
SPATS2
Gene type
protein-coding
Gene description
spermatogenesis associated serine rich 2
Gene Entrez Gene ID
65244
Variants

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Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 49,367,465 49,367,587
2 49,371,228 49,371,290
3 49,387,054 49,387,137
4 49,460,770 49,461,037
5 49,484,590 49,484,669
6 49,489,465 49,489,573
7 49,490,682 49,490,731
8 49,494,741 49,495,002
9 49,496,833 49,497,009
10 49,500,070 49,500,205
11 49,514,555 49,514,613
12 49,519,073 49,519,182
13 49,522,751 49,522,853
14 49,524,682 49,524,896
15 49,525,944 49,527,424
CDS
Exon number Type Start Stop
4 CDS 49,461,013 49,461,037
5 CDS 49,484,590 49,484,669
6 CDS 49,489,465 49,489,573
7 CDS 49,490,682 49,490,731
8 CDS 49,494,741 49,495,002
9 CDS 49,496,833 49,497,009
10 CDS 49,500,070 49,500,205
11 CDS 49,514,555 49,514,613
12 CDS 49,519,073 49,519,182
13 CDS 49,522,751 49,522,853
14 CDS 49,524,682 49,524,896
15 CDS 49,525,944 49,526,255
Other genome
Genome Chromosome Start End Links
hg19 chr12 49,761,248 49,921,207 Link
CDS sequence
ATGTCCAGGAAACAGAACCAGAAGGATTCATCAGGATTCATTTTTGATTTGCAGTCCAATACCGTACTGGCCCAGGGAGGAGCTTTTGAGAACATGAAAGAGAAGATAAATGCGGTACGTGCAATAGTTCCTAATAAGAGCAACAATGAAATTATCCTGGTTTTGCAGCACTTTGATAACTGTGTGGACAAAACAGTACAAGCATTCATGGAAGGTAGTGCCAGTGAAGTACTCAAAGAATGGACAGTAACAGGCAAGAAAAAGAACAAAAAGAAGAAAAACAAACCGAAACCTGCCGCAGAACCAAGTAACGGCATCCCAGATTCCAGTAAATCAGTTTCCATTCAAGAGGAACAGTCTGCGCCTTCCTCAGAGAAAGGTGGTATGAATGGCTACCATGTCAATGGTGCCATCAATGACACTGAGTCTGTGGACTCACTCAGTGAAGGTTTGGAGACACTTTCAATAGATGCCAGAGAATTGGAGGATCCCGAGTCTGCCATGCTAGATACGCTGGATAGAACAGGATCCATGCTGCAGAATGGTGTCTCTGATTTTGAGACCAAGTCTTTGACTATGCACTCTATTCACAATTCTCAACAACCCAGGAATGCTGCCAAATCTCTCTCAAGACCTACCACAGAAACTCAGTTTTCAAATATGGGGATGGAAGATGTTCCCCTCGCCACCAGTAAAAAGCTAAGTTCCAATATTGAAAAATCTGTAAAAGACCTCCAGCGCTGCACAGTGTCTCTTGCACGGTATCGAGTTGTAGTTAAAGAAGAGATGGATGCCTCCATTAAGAAAATGAAACAAGCCTTTGCTGAATTGGAGAGCTGTTTAATGGATCGAGAAGTGGCGTTGCTTGCTGAAATGGACAAAGTGAAAGCTGAAGCAATGGAAATTTTGCTCAGCCGACAAAAGAAGGCTGAACTTCTAAAGAAGATGACTCATGTGGCTGTTCAAATGTCAGAGCAGCAATTGGTTGAGCTCAGAGCTGATATCAAGCACTTTGTTAGTGAACGTAAATATGATGAGGATCTGGGACGAGTAGCCCGGTTCACCTGTGATGTAGAGACCCTAAAGAAGAGCATTGATTCATTTGGACAAGTGTCTCATCCAAAGAACAGCTATTCGACCAGATCCCGATGTAGCTCAGTTACATCTGTGTCCTTGAGTAGCCCAAGTGATGCCTCTGCTGCTTCCTCTTCCACCTGTGCCTCTCCTCCCAGCCTTACAAGTGCTAACAAGAAAAACTTTGCACCGGGAGAGACTCCTGCAGCCATAGCAAACTCCAGTGGCCAGCCCTACCAGCCACTTCGGGAGGTATTGCCAGGGAACAGACGAGGAGGACAGGGCTATAGGCCACAAGGCCAAAAGTCCAATGACCCCATGAACCAAGGGCGGCATGACAGTATGGGTCGTTACAGAAACAGCTCGTGGTATTCATCTGGTTCCAGGTATCAGAGTGCTCCATCTCAGGCACCAGGAAACACCATTGAAAGAGGCCAGACTCACTCTGCAGGGACCAATGGAACTGGAGTCAGCATGGAGCCCAGCCCTCCCACGCCTTCATTCAAAAAGGGGCTCCCCCAGCGCAAACCCAGGACCTCTCAGACTGAAGCCGTGAACTCTTGA
Amino sequence
MSRKQNQKDSSGFIFDLQSNTVLAQGGAFENMKEKINAVRAIVPNKSNNEIILVLQHFDNCVDKTVQAFMEGSASEVLKEWTVTGKKKNKKKKNKPKPAAEPSNGIPDSSKSVSIQEEQSAPSSEKGGMNGYHVNGAINDTESVDSLSEGLETLSIDARELEDPESAMLDTLDRTGSMLQNGVSDFETKSLTMHSIHNSQQPRNAAKSLSRPTTETQFSNMGMEDVPLATSKKLSSNIEKSVKDLQRCTVSLARYRVVVKEEMDASIKKMKQAFAELESCLMDREVALLAEMDKVKAEAMEILLSRQKKAELLKKMTHVAVQMSEQQLVELRADIKHFVSERKYDEDLGRVARFTCDVETLKKSIDSFGQVSHPKNSYSTRSRCSSVTSVSLSSPSDASAASSSTCASPPSLTSANKKNFAPGETPAAIANSSGQPYQPLREVLPGNRRGGQGYRPQGQKSNDPMNQGRHDSMGRYRNSSWYSSGSRYQSAPSQAPGNTIERGQTHSAGTNGTGVSMEPSPPTPSFKKGLPQRKPRTSQTEAVNS*