ENST00000553127.5 SPATS2

Information
Transcript ID
ENST00000553127.5
Genome
hg19
Position
chr12:49,761,248-49,921,207
Strand
+
CDS length
1,638
Amino acid length
546
Gene symbol
SPATS2
Gene type
protein-coding
Gene description
spermatogenesis associated serine rich 2
Gene Entrez Gene ID
65244
Variants

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Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 49,761,248 49,761,370
2 49,765,011 49,765,073
3 49,780,837 49,780,920
4 49,854,553 49,854,820
5 49,878,373 49,878,452
6 49,883,248 49,883,356
7 49,884,465 49,884,514
8 49,888,524 49,888,785
9 49,890,616 49,890,792
10 49,893,853 49,893,988
11 49,908,338 49,908,396
12 49,912,856 49,912,965
13 49,916,534 49,916,636
14 49,918,465 49,918,679
15 49,919,727 49,921,207
CDS
Exon number Type Start Stop
4 CDS 49,854,796 49,854,820
5 CDS 49,878,373 49,878,452
6 CDS 49,883,248 49,883,356
7 CDS 49,884,465 49,884,514
8 CDS 49,888,524 49,888,785
9 CDS 49,890,616 49,890,792
10 CDS 49,893,853 49,893,988
11 CDS 49,908,338 49,908,396
12 CDS 49,912,856 49,912,965
13 CDS 49,916,534 49,916,636
14 CDS 49,918,465 49,918,679
15 CDS 49,919,727 49,920,038
Other genome
Genome Chromosome Start End Links
hg38 chr12 49,367,465 49,527,424 Link
CDS sequence
ATGTCCAGGAAACAGAACCAGAAGGATTCATCAGGATTCATTTTTGATTTGCAGTCCAATACCGTACTGGCCCAGGGAGGAGCTTTTGAGAACATGAAAGAGAAGATAAATGCGGTACGTGCAATAGTTCCTAATAAGAGCAACAATGAAATTATCCTGGTTTTGCAGCACTTTGATAACTGTGTGGACAAAACAGTACAAGCATTCATGGAAGGTAGTGCCAGTGAAGTACTCAAAGAATGGACAGTAACAGGCAAGAAAAAGAACAAAAAGAAGAAAAACAAACCGAAACCTGCCGCAGAACCAAGTAACGGCATCCCAGATTCCAGTAAATCAGTTTCCATTCAAGAGGAACAGTCTGCGCCTTCCTCAGAGAAAGGTGGTATGAATGGCTACCATGTCAATGGTGCCATCAATGACACTGAGTCTGTGGACTCACTCAGTGAAGGTTTGGAGACACTTTCAATAGATGCCAGAGAATTGGAGGATCCCGAGTCTGCCATGCTAGATACGCTGGATAGAACAGGATCCATGCTGCAGAATGGTGTCTCTGATTTTGAGACCAAGTCTTTGACTATGCACTCTATTCACAATTCTCAACAACCCAGGAATGCTGCCAAATCTCTCTCAAGACCTACCACAGAAACTCAGTTTTCAAATATGGGGATGGAAGATGTTCCCCTCGCCACCAGTAAAAAGCTAAGTTCCAATATTGAAAAATCTGTAAAAGACCTCCAGCGCTGCACAGTGTCTCTTGCACGGTATCGAGTTGTAGTTAAAGAAGAGATGGATGCCTCCATTAAGAAAATGAAACAAGCCTTTGCTGAATTGGAGAGCTGTTTAATGGATCGAGAAGTGGCGTTGCTTGCTGAAATGGACAAAGTGAAAGCTGAAGCAATGGAAATTTTGCTCAGCCGACAAAAGAAGGCTGAACTTCTAAAGAAGATGACTCATGTGGCTGTTCAAATGTCAGAGCAGCAATTGGTTGAGCTCAGAGCTGATATCAAGCACTTTGTTAGTGAACGTAAATATGATGAGGATCTGGGACGAGTAGCCCGGTTCACCTGTGATGTAGAGACCCTAAAGAAGAGCATTGATTCATTTGGACAAGTGTCTCATCCAAAGAACAGCTATTCGACCAGATCCCGATGTAGCTCAGTTACATCTGTGTCCTTGAGTAGCCCAAGTGATGCCTCTGCTGCTTCCTCTTCCACCTGTGCCTCTCCTCCCAGCCTTACAAGTGCTAACAAGAAAAACTTTGCACCGGGAGAGACTCCTGCAGCCATAGCAAACTCCAGTGGCCAGCCCTACCAGCCACTTCGGGAGGTATTGCCAGGGAACAGACGAGGAGGACAGGGCTATAGGCCACAAGGCCAAAAGTCCAATGACCCCATGAACCAAGGGCGGCATGACAGTATGGGTCGTTACAGAAACAGCTCGTGGTATTCATCTGGTTCCAGGTATCAGAGTGCTCCATCTCAGGCACCAGGAAACACCATTGAAAGAGGCCAGACTCACTCTGCAGGGACCAATGGAACTGGAGTCAGCATGGAGCCCAGCCCTCCCACGCCTTCATTCAAAAAGGGGCTCCCCCAGCGCAAACCCAGGACCTCTCAGACTGAAGCCGTGAACTCTTGA
Amino sequence
MSRKQNQKDSSGFIFDLQSNTVLAQGGAFENMKEKINAVRAIVPNKSNNEIILVLQHFDNCVDKTVQAFMEGSASEVLKEWTVTGKKKNKKKKNKPKPAAEPSNGIPDSSKSVSIQEEQSAPSSEKGGMNGYHVNGAINDTESVDSLSEGLETLSIDARELEDPESAMLDTLDRTGSMLQNGVSDFETKSLTMHSIHNSQQPRNAAKSLSRPTTETQFSNMGMEDVPLATSKKLSSNIEKSVKDLQRCTVSLARYRVVVKEEMDASIKKMKQAFAELESCLMDREVALLAEMDKVKAEAMEILLSRQKKAELLKKMTHVAVQMSEQQLVELRADIKHFVSERKYDEDLGRVARFTCDVETLKKSIDSFGQVSHPKNSYSTRSRCSSVTSVSLSSPSDASAASSSTCASPPSLTSANKKNFAPGETPAAIANSSGQPYQPLREVLPGNRRGGQGYRPQGQKSNDPMNQGRHDSMGRYRNSSWYSSGSRYQSAPSQAPGNTIERGQTHSAGTNGTGVSMEPSPPTPSFKKGLPQRKPRTSQTEAVNS*