chr6:132575771:T>C Detail (hg38)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr6:132,896,910-132,896,910 View the variant detail on this assembly version. |
| hg38 | chr6:132,575,771-132,575,771 |
HGVS
[No Data.]
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.155 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| <0.001 | Mental Depression | In this study we investigated for the first time the possible association betwee... | BeFree | 20493543 | Detail |
| <0.001 | bipolar disorder | A three SNP haplotype consisting of alleles GCT from SNPs rs7452939, rs6903874 a... | BeFree | 17097106 | Detail |
| 0.120 | schizophrenia | A three SNP haplotype consisting of alleles GCT from SNPs rs7452939, rs6903874 a... | BeFree | 17097106 | Detail |
| 0.006 | bipolar disorder | We have further studied a previously investigated sample of 187 major depressive... | BeFree | 19582769 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| In this study we investigated for the first time the possible association between a set of TAAR6 gen... | DisGeNET | Detail |
| A three SNP haplotype consisting of alleles GCT from SNPs rs7452939, rs6903874 and rs6937506, respec... | DisGeNET | Detail |
| A three SNP haplotype consisting of alleles GCT from SNPs rs7452939, rs6903874 and rs6937506, respec... | DisGeNET | Detail |
| We have further studied a previously investigated sample of 187 major depressive disorder (MDD) pati... | DisGeNET | Detail |
- Gene
- -
- dbSNP
- rs6903874 dbSNP
- Genome
- hg38
- Position
- chr6:132,575,771-132,575,771
- Variant Type
- snv
- Reference Allele
- T
- Alternative Allele
- C
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs6903874
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.1555
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 2607
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
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