chr6:78173382:A>C Detail (hg19)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr6:78,173,382-78,173,382 |
| hg38 | chr6:77,463,665-77,463,665 View the variant detail on this assembly version. |
HGVS
[No Data.]
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.084 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| 0.011 | Unipolar Depression | Six polymorphisms in four genes related to the serotonin system, including the H... | BeFree | 19897250 | Detail |
| 0.040 | major depressive disorder | Six polymorphisms in four genes related to the serotonin system, including the H... | BeFree | 19897250 | Detail |
| 0.233 | major depressive disorder | Six polymorphisms in four genes related to the serotonin system, including the H... | BeFree | 19897250 | Detail |
| 0.011 | Unipolar Depression | Six polymorphisms in four genes related to the serotonin system, including the H... | BeFree | 19897250 | Detail |
| 0.155 | major depressive disorder | Six polymorphisms in four genes related to the serotonin system, including the H... | BeFree | 19897250 | Detail |
| 0.038 | Unipolar Depression | Six polymorphisms in four genes related to the serotonin system, including the H... | BeFree | 19897250 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| Six polymorphisms in four genes related to the serotonin system, including the HTTLPR and HTTVNTR in... | DisGeNET | Detail |
| Six polymorphisms in four genes related to the serotonin system, including the HTTLPR and HTTVNTR in... | DisGeNET | Detail |
| Six polymorphisms in four genes related to the serotonin system, including the HTTLPR and HTTVNTR in... | DisGeNET | Detail |
| Six polymorphisms in four genes related to the serotonin system, including the HTTLPR and HTTVNTR in... | DisGeNET | Detail |
| Six polymorphisms in four genes related to the serotonin system, including the HTTLPR and HTTVNTR in... | DisGeNET | Detail |
| Six polymorphisms in four genes related to the serotonin system, including the HTTLPR and HTTVNTR in... | DisGeNET | Detail |
- Gene
- -
- dbSNP
- rs11568817 dbSNP
- Genome
- hg19
- Position
- chr6:78,173,382-78,173,382
- Variant Type
- snv
- Reference Allele
- A
- Alternative Allele
- C
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs11568817
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.0839
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 1406
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
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