chr6:32678999:A>G Detail (hg19)

Information

Genome

Assembly Position
hg19 chr6:32,678,999-32,678,999
hg38 chr6:32,711,222-32,711,222 View the variant detail on this assembly version.

HGVS

[No Data.]
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:0.653
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Disease area statistics
MGeND
Clinical significance Last evaluated Condition Origin Submission ID Submitter Institute Citation Comment Image
not provided hepatitis B MGS000002
(TMGS000002) 		Masashi Mizokami National Center for Global Health and Medicine
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.043 Lupus Erythematosus, Systemic [We identified and then confirmed through replication two new genetic loci for S... GAD 18204098 Detail
<0.001 Hepatitis B Virus-Related Hepatocellular Carcinoma Genome-wide association studies (GWAS) have identified three loci (rs17401966 in... BeFree 24204805 Detail
<0.001 Hepatitis B Virus-Related Hepatocellular Carcinoma Genome-wide association studies (GWAS) have identified three loci (rs17401966 in... BeFree 24204805 Detail
0.001 hepatitis B Genome-wide association studies (GWAS) have identified three loci (rs17401966 in... BeFree 24204805 Detail
0.011 hepatitis B Genome-wide association studies (GWAS) have identified three loci (rs17401966 in... BeFree 24204805 Detail
<0.001 Hepatitis B Virus-Related Hepatocellular Carcinoma Genome-wide association studies (GWAS) have identified three loci (rs17401966 in... BeFree 24204805 Detail
<0.001 hepatitis C Genome-wide association studies (GWAS) have identified three loci (rs17401966 in... BeFree 24204805 Detail
<0.001 Hepatitis B Virus-Related Hepatocellular Carcinoma Genome-wide association studies (GWAS) have identified three loci (rs17401966 in... BeFree 24204805 Detail
<0.001 hepatitis C Genome-wide association studies (GWAS) have identified three loci (rs17401966 in... BeFree 24204805 Detail
<0.001 Hepatitis B Virus-Related Hepatocellular Carcinoma Genome-wide association studies (GWAS) have identified three loci (rs17401966 in... BeFree 24204805 Detail
0.032 hepatitis C Genome-wide association studies (GWAS) have identified three loci (rs17401966 in... BeFree 24204805 Detail
0.004 hepatitis C Genome-wide association studies (GWAS) have identified three loci (rs17401966 in... BeFree 24204805 Detail
0.001 hepatitis B Genome-wide association studies (GWAS) have identified three loci (rs17401966 in... BeFree 24204805 Detail
0.018 hepatitis B Our study demonstrated the clear relevance of HLA-DQ rs2856718 and rs9275572 wit... BeFree 24750255 Detail
0.016 liver carcinoma [Genome-wide association study identifies a susceptibility locus for HCV-induced... GAD 21499248 Detail
0.018 hepatitis B These findings provided convincing evidence that rs9275572 significantly associa... BeFree 24204805 Detail
0.012 alopecia areata [Genome-wide association study in alopecia areata implicates both innate and ada... GAD 20596022 Detail
<0.001 Chronic liver disease HLA-DQ (rs9275572) and GNLY (rs1866139 and rs11127) were genotyped in 310 subjec... BeFree 25644528 Detail
Annotation

Annotations

DescrptionSourceLinks
[We identified and then confirmed through replication two new genetic loci for SLE: a promoter-regio... DisGeNET Detail
Genome-wide association studies (GWAS) have identified three loci (rs17401966 in KIF1B, rs7574865 in... DisGeNET Detail
Genome-wide association studies (GWAS) have identified three loci (rs17401966 in KIF1B, rs7574865 in... DisGeNET Detail
Genome-wide association studies (GWAS) have identified three loci (rs17401966 in KIF1B, rs7574865 in... DisGeNET Detail
Genome-wide association studies (GWAS) have identified three loci (rs17401966 in KIF1B, rs7574865 in... DisGeNET Detail
Genome-wide association studies (GWAS) have identified three loci (rs17401966 in KIF1B, rs7574865 in... DisGeNET Detail
Genome-wide association studies (GWAS) have identified three loci (rs17401966 in KIF1B, rs7574865 in... DisGeNET Detail
Genome-wide association studies (GWAS) have identified three loci (rs17401966 in KIF1B, rs7574865 in... DisGeNET Detail
Genome-wide association studies (GWAS) have identified three loci (rs17401966 in KIF1B, rs7574865 in... DisGeNET Detail
Genome-wide association studies (GWAS) have identified three loci (rs17401966 in KIF1B, rs7574865 in... DisGeNET Detail
Genome-wide association studies (GWAS) have identified three loci (rs17401966 in KIF1B, rs7574865 in... DisGeNET Detail
Genome-wide association studies (GWAS) have identified three loci (rs17401966 in KIF1B, rs7574865 in... DisGeNET Detail
Genome-wide association studies (GWAS) have identified three loci (rs17401966 in KIF1B, rs7574865 in... DisGeNET Detail
Our study demonstrated the clear relevance of HLA-DQ rs2856718 and rs9275572 with HBV susceptibility... DisGeNET Detail
[Genome-wide association study identifies a susceptibility locus for HCV-induced hepatocellular carc... DisGeNET Detail
These findings provided convincing evidence that rs9275572 significantly associated with HBV-related... DisGeNET Detail
[Genome-wide association study in alopecia areata implicates both innate and adaptive immunity.] DisGeNET Detail
HLA-DQ (rs9275572) and GNLY (rs1866139 and rs11127) were genotyped in 310 subjects with HBV-related ... DisGeNET Detail
Gene
-
dbSNP
rs9275572 dbSNP
Genome
hg19
Position
chr6:32,678,999-32,678,999
Variant Type
snv
Reference Allele
A
Alternative Allele
G
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs9275572
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.6527
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
10939
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16760
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