chr19:45923653:A>G Detail (hg19) (ERCC1)

Information

Genome

Assembly Position
hg19 chr19:45,923,653-45,923,653
hg38 chr19:45,420,395-45,420,395 View the variant detail on this assembly version.

HGVS

Type Transcript Protein
RefSeq NM_202001.2:c.354T>C NP_973730.1:p.Asn118=
NM_001983.3:c.354T>C NP_001974.1:p.Asn118=
NM_001166049.1:c.354T>C NP_001159521.1:p.Asn118=
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:0.704
ToMMo:0.714
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:0.737

Prediction

ClinVar

Clinical Significance Benign
Review star
Show details
Links
Type Database ID Link
Gene MIM 126380 OMIM
HGNC 3433 HGNC
Ensembl ENSG00000012061 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar tgv62287646 TogoVar
COSMIC
MONDO
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
Clinical significance Last evaluated Review status Condition Origin Links
Benign 2024-01-30 criteria provided, multiple submitters, no conflicts not provided germline Detail
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.006 breast carcinoma Gene-gene interaction analysis showed that subjects carrying ERCC1 rs11615 C all... BeFree 24582975 Detail
0.156 Non-small cell lung carcinoma Multivariate Cox regression analysis showed that ERCC1 rs11615 AA genotype (P = ... BeFree 24933103 Detail
0.003 Malignant neoplasm of larynx In summary, we suggest that genetic variations in ERCC1 rs11615 and ERCC5 rs1765... BeFree 24563277 Detail
0.010 Malignant neoplasm of stomach By the Cox analysis, the CC genotype of ERCC1 rs11615, AA genotype of ERCC2 rs17... BeFree 25542228 Detail
0.156 Non-small cell lung carcinoma In conclusion, ERCC1 rs11615 and rs3212986 polymorphism were associated with a p... BeFree 24859833 Detail
0.084 Carcinoma of lung Furthermore, a significant effect of SNPs in nucleotide excision repair pathway ... BeFree 21739480 Detail
0.014 Esophageal Neoplasms Furthermore, a considerable correlation was observed between ERCC1 rs11615 and t... BeFree 26426637 Detail
<0.001 Carcinoma of larynx In summary, we suggest that genetic variations in ERCC1 rs11615 and ERCC5 rs1765... BeFree 24563277 Detail
0.156 Non-small cell lung carcinoma We investigated the association of three DNA repair gene polymorphisms - Asn118A... BeFree 21766907 Detail
0.002 esophageal carcinoma Single nucleotide polymorphisms of ERCC1 (rs11615) could therefore be applied to... BeFree 21956434 Detail
0.002 Carcinoma of lung A specific diplotype defined by PPP1R13L rs1970764, CD3EAP rs967591 and ERCC1 rs... BeFree 22335888 Detail
0.001 colorectal cancer To summarize published data on the association between polymorphisms of NER gene... BeFree 21278243 Detail
0.008 Carcinoma of lung A specific diplotype defined by PPP1R13L rs1970764, CD3EAP rs967591 and ERCC1 rs... BeFree 22335888 Detail
0.002 Carcinogenesis Two polymorphisms of ERCC1, T19007C (rs11615) and C8092A (rs3212986), have been ... BeFree 19361884 Detail
0.002 Carcinoma of lung A specific diplotype defined by PPP1R13L rs1970764, CD3EAP rs967591 and ERCC1 rs... BeFree 22335888 Detail
0.018 Malignant neoplasm of breast Gene-gene interaction analysis showed that subjects carrying ERCC1 rs11615 C all... BeFree 24582975 Detail
0.003 Xeroderma pigmentosum, group F We investigated the association between polymorphisms in excision repair cross-c... BeFree 24861646 Detail
<0.001 stomach carcinoma In conclusion, our results suggest that ERCC1 rs11615, ERCC2 rs1799793, and NBN ... BeFree 25542228 Detail
0.019 Malignant neoplasm of breast Gene-gene interaction analysis showed that subjects carrying ERCC1 rs11615 C all... BeFree 24582975 Detail
0.006 colorectal cancer We investigated the association between polymorphisms in excision repair cross-c... BeFree 24861646 Detail
0.014 Esophageal Neoplasms Single nucleotide polymorphisms of ERCC1 (rs11615) could therefore be applied to... BeFree 21956434 Detail
0.003 Xeroderma pigmentosum, group F In conclusion, we found that ERCC1 rs11615 and XPF rs2276465 may substantially c... BeFree 24793015 Detail
<0.001 Osteosarcoma of bone Excision repair cross-complementing (ERCC) group 2 (XPD; rs13181 and rs1799793),... BeFree 21826087 Detail
0.001 glioblastoma Furthermore, the haplotype containing the C allele of ERCC2 rs13181 polymorphism... BeFree 24325908 Detail
0.002 breast carcinoma Gene-gene interaction analysis showed that subjects carrying ERCC1 rs11615 C all... BeFree 24582975 Detail
0.003 Malignant neoplasm of larynx In summary, we suggest that genetic variations in ERCC1 rs11615 and ERCC5 rs1765... BeFree 24563277 Detail
0.012 Malignant neoplasm of esophagus Single nucleotide polymorphisms of ERCC1 (rs11615) could therefore be applied to... BeFree 21956434 Detail
0.002 Colorectal cancer metastatic We retrospectively investigated pharmacogenomic characteristics of OXCPN in 70 J... BeFree 23547850 Detail
0.002 Osteosarcoma of bone Excision repair cross-complementing (ERCC) group 2 (XPD; rs13181 and rs1799793),... BeFree 21826087 Detail
<0.001 Carcinoma of larynx In conclusion, our study suggests that ERCC1 rs11615 and ERCC5 rs17655 polymorph... BeFree 24582975 Detail
0.012 Malignant neoplasm of stomach In conclusion, our results suggest that ERCC1 rs11615, ERCC2 rs1799793, and NBN ... BeFree 25542228 Detail
0.003 osteosarcoma In conclusion, our results suggest that ERCC1 rs11615 polymorphism in the DNA re... BeFree 25755792 Detail
0.003 Colorectal cancer metastatic We retrospectively investigated pharmacogenomic characteristics of OXCPN in 70 J... BeFree 23547850 Detail
<0.001 Carcinoma of larynx In summary, we suggest that genetic variations in ERCC1 rs11615 and ERCC5 rs1765... BeFree 24563277 Detail
0.012 Malignant neoplasm of esophagus Furthermore, a considerable correlation was observed between ERCC1 rs11615 and t... BeFree 26426637 Detail
0.002 Xeroderma Pigmentosum, Complementation Group D The correlation between ERCC1 polymorphisms (rs11615 and rs3212986) and XPD poly... BeFree 26426637 Detail
0.003 Malignant neoplasm of stomach In conclusion, our results suggest that ERCC1 rs11615, ERCC2 rs1799793, and NBN ... BeFree 25542228 Detail
<0.001 colorectal carcinoma We investigated the association between polymorphisms in excision repair cross-c... BeFree 24861646 Detail
<0.001 Prostate Cancer, Hereditary, 7 SNPs rs11615 (ERCC1) and rs17503908 (ATM) appeared as risk factors for prostate ... BeFree 25540025 Detail
0.003 osteosarcoma Excision repair cross-complementing (ERCC) group 2 (XPD; rs13181 and rs1799793),... BeFree 21826087 Detail
0.004 Malignant neoplasm of lung A specific diplotype defined by PPP1R13L rs1970764, CD3EAP rs967591 and ERCC1 rs... BeFree 22335888 Detail
0.004 osteosarcoma Excision repair cross-complementing (ERCC) group 2 (XPD; rs13181 and rs1799793),... BeFree 21826087 Detail
0.002 esophageal carcinoma Furthermore, a considerable correlation was observed between ERCC1 rs11615 and t... BeFree 26426637 Detail
0.003 Malignant neoplasm of larynx In conclusion, our study suggests that ERCC1 rs11615 and ERCC5 rs17655 polymorph... BeFree 24582975 Detail
<0.001 Osteosarcoma of bone In conclusion, our results suggest that ERCC1 rs11615 polymorphism in the DNA re... BeFree 25755792 Detail
0.008 Carcinoma of lung Furthermore, a significant effect of SNPs in nucleotide excision repair pathway ... BeFree 21739480 Detail
0.009 stomach carcinoma By the Cox analysis, the CC genotype of ERCC1 rs11615, AA genotype of ERCC2 rs17... BeFree 25542228 Detail
0.067 Malignant neoplasm of lung Furthermore, a significant effect of SNPs in nucleotide excision repair pathway ... BeFree 21739480 Detail
0.444 Xeroderma pigmentosum, group F We investigated the association between polymorphisms in excision repair cross-c... BeFree 24861646 Detail
0.007 Malignant neoplasm of lung A specific diplotype defined by PPP1R13L rs1970764, CD3EAP rs967591 and ERCC1 rs... BeFree 22335888 Detail
0.002 stomach carcinoma In conclusion, our results suggest that ERCC1 rs11615, ERCC2 rs1799793, and NBN ... BeFree 25542228 Detail
0.044 Malignant neoplasm of lung Furthermore, a significant effect of SNPs in nucleotide excision repair pathway ... BeFree 21739480 Detail
0.002 Non-small cell lung carcinoma We investigated the association of three DNA repair gene polymorphisms - Asn118A... BeFree 21766907 Detail
0.067 Malignant neoplasm of lung A specific diplotype defined by PPP1R13L rs1970764, CD3EAP rs967591 and ERCC1 rs... BeFree 22335888 Detail
0.005 Non-small cell lung carcinoma We investigated the association of three DNA repair gene polymorphisms - Asn118A... BeFree 21766907 Detail
0.001 colorectal carcinoma To summarize published data on the association between polymorphisms of NER gene... BeFree 21278243 Detail
0.042 breast carcinoma We aimed to determine the associations of genetic polymorphisms of excision repa... BeFree 24933103 Detail
0.005 Non-small cell lung carcinoma We aimed to determine the associations of genetic polymorphisms of excision repa... BeFree 24933103 Detail
0.012 Non-small cell lung carcinoma We aimed to determine the associations of genetic polymorphisms of excision repa... BeFree 24933103 Detail
0.002 Xeroderma Pigmentosum, Complementation Group D We aimed to determine the associations of genetic polymorphisms of excision repa... BeFree 24933103 Detail
0.098 Malignant neoplasm of breast We aimed to determine the associations of genetic polymorphisms of excision repa... BeFree 24933103 Detail
0.080 breast carcinoma We aimed to determine the associations of genetic polymorphisms of excision repa... BeFree 24933103 Detail
0.018 Malignant neoplasm of breast We aimed to determine the associations of genetic polymorphisms of excision repa... BeFree 24933103 Detail
0.005 Non-small cell lung carcinoma We aimed to determine the associations of genetic polymorphisms of excision repa... BeFree 24933103 Detail
0.084 Malignant neoplasm of breast We aimed to determine the associations of genetic polymorphisms of excision repa... BeFree 24933103 Detail
0.018 breast carcinoma We aimed to determine the associations of genetic polymorphisms of excision repa... BeFree 24933103 Detail
0.011 breast carcinoma We aimed to determine the associations of genetic polymorphisms of excision repa... BeFree 24933103 Detail
0.360 Malignant neoplasm of breast We aimed to determine the associations of genetic polymorphisms of excision repa... BeFree 24933103 Detail
0.097 Malignant neoplasm of breast We aimed to determine the associations of genetic polymorphisms of excision repa... BeFree 24933103 Detail
0.085 Malignant neoplasm of breast We aimed to determine the associations of genetic polymorphisms of excision repa... BeFree 24933103 Detail
0.008 breast carcinoma We aimed to determine the associations of genetic polymorphisms of excision repa... BeFree 24933103 Detail
0.006 breast carcinoma We aimed to determine the associations of genetic polymorphisms of excision repa... BeFree 24933103 Detail
Annotation

Annotations

DescrptionSourceLinks
NM_001983.4(ERCC1):c.354T>C (p.Asn118=) AND not provided ClinVar Detail
Gene-gene interaction analysis showed that subjects carrying ERCC1 rs11615 C allele and XPG/ERCC5 rs... DisGeNET Detail
Multivariate Cox regression analysis showed that ERCC1 rs11615 AA genotype (P = 0.020) and smoking (... DisGeNET Detail
In summary, we suggest that genetic variations in ERCC1 rs11615 and ERCC5 rs17655 are associated wit... DisGeNET Detail
By the Cox analysis, the CC genotype of ERCC1 rs11615, AA genotype of ERCC2 rs1799793, and CC genoty... DisGeNET Detail
In conclusion, ERCC1 rs11615 and rs3212986 polymorphism were associated with a poor response to chem... DisGeNET Detail
Furthermore, a significant effect of SNPs in nucleotide excision repair pathway on lung cancer survi... DisGeNET Detail
Furthermore, a considerable correlation was observed between ERCC1 rs11615 and the response rate of ... DisGeNET Detail
In summary, we suggest that genetic variations in ERCC1 rs11615 and ERCC5 rs17655 are associated wit... DisGeNET Detail
We investigated the association of three DNA repair gene polymorphisms - Asn118Asn in ERCC1 (rs11615... DisGeNET Detail
Single nucleotide polymorphisms of ERCC1 (rs11615) could therefore be applied to further individuali... DisGeNET Detail
A specific diplotype defined by PPP1R13L rs1970764, CD3EAP rs967591 and ERCC1 rs11615 and lung cance... DisGeNET Detail
To summarize published data on the association between polymorphisms of NER genes (ERCC1 and ERCC2) ... DisGeNET Detail
A specific diplotype defined by PPP1R13L rs1970764, CD3EAP rs967591 and ERCC1 rs11615 and lung cance... DisGeNET Detail
Two polymorphisms of ERCC1, T19007C (rs11615) and C8092A (rs3212986), have been reported to affect b... DisGeNET Detail
A specific diplotype defined by PPP1R13L rs1970764, CD3EAP rs967591 and ERCC1 rs11615 and lung cance... DisGeNET Detail
Gene-gene interaction analysis showed that subjects carrying ERCC1 rs11615 C allele and XPG/ERCC5 rs... DisGeNET Detail
We investigated the association between polymorphisms in excision repair cross-complementation group... DisGeNET Detail
In conclusion, our results suggest that ERCC1 rs11615, ERCC2 rs1799793, and NBN rs1805794 polymorphi... DisGeNET Detail
Gene-gene interaction analysis showed that subjects carrying ERCC1 rs11615 C allele and XPG/ERCC5 rs... DisGeNET Detail
We investigated the association between polymorphisms in excision repair cross-complementation group... DisGeNET Detail
Single nucleotide polymorphisms of ERCC1 (rs11615) could therefore be applied to further individuali... DisGeNET Detail
In conclusion, we found that ERCC1 rs11615 and XPF rs2276465 may substantially contribute to the fut... DisGeNET Detail
Excision repair cross-complementing (ERCC) group 2 (XPD; rs13181 and rs1799793), group 5 (XPG; rs176... DisGeNET Detail
Furthermore, the haplotype containing the C allele of ERCC2 rs13181 polymorphism and the T allele of... DisGeNET Detail
Gene-gene interaction analysis showed that subjects carrying ERCC1 rs11615 C allele and XPG/ERCC5 rs... DisGeNET Detail
In summary, we suggest that genetic variations in ERCC1 rs11615 and ERCC5 rs17655 are associated wit... DisGeNET Detail
Single nucleotide polymorphisms of ERCC1 (rs11615) could therefore be applied to further individuali... DisGeNET Detail
We retrospectively investigated pharmacogenomic characteristics of OXCPN in 70 Japanese patients wit... DisGeNET Detail
Excision repair cross-complementing (ERCC) group 2 (XPD; rs13181 and rs1799793), group 5 (XPG; rs176... DisGeNET Detail
In conclusion, our study suggests that ERCC1 rs11615 and ERCC5 rs17655 polymorphisms are associated ... DisGeNET Detail
In conclusion, our results suggest that ERCC1 rs11615, ERCC2 rs1799793, and NBN rs1805794 polymorphi... DisGeNET Detail
In conclusion, our results suggest that ERCC1 rs11615 polymorphism in the DNA repair pathways play a... DisGeNET Detail
We retrospectively investigated pharmacogenomic characteristics of OXCPN in 70 Japanese patients wit... DisGeNET Detail
In summary, we suggest that genetic variations in ERCC1 rs11615 and ERCC5 rs17655 are associated wit... DisGeNET Detail
Furthermore, a considerable correlation was observed between ERCC1 rs11615 and the response rate of ... DisGeNET Detail
The correlation between ERCC1 polymorphisms (rs11615 and rs3212986) and XPD polymorphisms (rs13181 a... DisGeNET Detail
In conclusion, our results suggest that ERCC1 rs11615, ERCC2 rs1799793, and NBN rs1805794 polymorphi... DisGeNET Detail
We investigated the association between polymorphisms in excision repair cross-complementation group... DisGeNET Detail
SNPs rs11615 (ERCC1) and rs17503908 (ATM) appeared as risk factors for prostate cancer aggressivenes... DisGeNET Detail
Excision repair cross-complementing (ERCC) group 2 (XPD; rs13181 and rs1799793), group 5 (XPG; rs176... DisGeNET Detail
A specific diplotype defined by PPP1R13L rs1970764, CD3EAP rs967591 and ERCC1 rs11615 and lung cance... DisGeNET Detail
Excision repair cross-complementing (ERCC) group 2 (XPD; rs13181 and rs1799793), group 5 (XPG; rs176... DisGeNET Detail
Furthermore, a considerable correlation was observed between ERCC1 rs11615 and the response rate of ... DisGeNET Detail
In conclusion, our study suggests that ERCC1 rs11615 and ERCC5 rs17655 polymorphisms are associated ... DisGeNET Detail
In conclusion, our results suggest that ERCC1 rs11615 polymorphism in the DNA repair pathways play a... DisGeNET Detail
Furthermore, a significant effect of SNPs in nucleotide excision repair pathway on lung cancer survi... DisGeNET Detail
By the Cox analysis, the CC genotype of ERCC1 rs11615, AA genotype of ERCC2 rs1799793, and CC genoty... DisGeNET Detail
Furthermore, a significant effect of SNPs in nucleotide excision repair pathway on lung cancer survi... DisGeNET Detail
We investigated the association between polymorphisms in excision repair cross-complementation group... DisGeNET Detail
A specific diplotype defined by PPP1R13L rs1970764, CD3EAP rs967591 and ERCC1 rs11615 and lung cance... DisGeNET Detail
In conclusion, our results suggest that ERCC1 rs11615, ERCC2 rs1799793, and NBN rs1805794 polymorphi... DisGeNET Detail
Furthermore, a significant effect of SNPs in nucleotide excision repair pathway on lung cancer survi... DisGeNET Detail
We investigated the association of three DNA repair gene polymorphisms - Asn118Asn in ERCC1 (rs11615... DisGeNET Detail
A specific diplotype defined by PPP1R13L rs1970764, CD3EAP rs967591 and ERCC1 rs11615 and lung cance... DisGeNET Detail
We investigated the association of three DNA repair gene polymorphisms - Asn118Asn in ERCC1 (rs11615... DisGeNET Detail
To summarize published data on the association between polymorphisms of NER genes (ERCC1 and ERCC2) ... DisGeNET Detail
We aimed to determine the associations of genetic polymorphisms of excision repair cross-complementa... DisGeNET Detail
We aimed to determine the associations of genetic polymorphisms of excision repair cross-complementa... DisGeNET Detail
We aimed to determine the associations of genetic polymorphisms of excision repair cross-complementa... DisGeNET Detail
We aimed to determine the associations of genetic polymorphisms of excision repair cross-complementa... DisGeNET Detail
We aimed to determine the associations of genetic polymorphisms of excision repair cross-complementa... DisGeNET Detail
We aimed to determine the associations of genetic polymorphisms of excision repair cross-complementa... DisGeNET Detail
We aimed to determine the associations of genetic polymorphisms of excision repair cross-complementa... DisGeNET Detail
We aimed to determine the associations of genetic polymorphisms of excision repair cross-complementa... DisGeNET Detail
We aimed to determine the associations of genetic polymorphisms of excision repair cross-complementa... DisGeNET Detail
We aimed to determine the associations of genetic polymorphisms of excision repair cross-complementa... DisGeNET Detail
We aimed to determine the associations of genetic polymorphisms of excision repair cross-complementa... DisGeNET Detail
We aimed to determine the associations of genetic polymorphisms of excision repair cross-complementa... DisGeNET Detail
We aimed to determine the associations of genetic polymorphisms of excision repair cross-complementa... DisGeNET Detail
We aimed to determine the associations of genetic polymorphisms of excision repair cross-complementa... DisGeNET Detail
We aimed to determine the associations of genetic polymorphisms of excision repair cross-complementa... DisGeNET Detail
We aimed to determine the associations of genetic polymorphisms of excision repair cross-complementa... DisGeNET Detail

Overlapped Transcript Coordinates

Gene Transcript ID Exon Number Chromosome Start Stop Type Amino Mutation Transcript Position Links

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs11615 dbSNP
Genome
hg19
Position
chr19:45,923,653-45,923,653
Variant Type
snv
Reference Allele
A
Alternative Allele
G
Filtering Status (HGVD)
PASS
# of samples (HGVD)
1207
Mean of sample read depth (HGVD)
66.60
Standard deviation of sample read depth (HGVD)
35.72
Number of reference allele (HGVD)
715
Number of alternative allele (HGVD)
1699
Allele Frequency (HGVD)
0.703811101905551
Gene Symbol (HGVD)
ERCC1
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs11615
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.7139
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
11965
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16760
East Asian Chromosome Counts (ExAC)
8578
East Asian Allele Counts (ExAC)
6318
East Asian Heterozygous Counts (ExAC)
1708
East Asian Homozygous Counts (ExAC)
2305
East Asian Allele Frequency (ExAC)
0.7365353229190954
Chromosome Counts in All Race (ExAC)
118006
Allele Counts in All Race (ExAC)
60002
Heterozygous Counts in All Race (ExAC)
26124
Homozygous Counts in All Race (ExAC)
16939
Allele Frequency in All Race (ExAC)
0.5084656712370558
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