chr15:32993111:C>T Detail (hg19)

Information

Genome

Assembly Position
hg19 chr15:32,993,111-32,993,111
hg38 chr15:32,700,910-32,700,910 View the variant detail on this assembly version.

HGVS

[No Data.]
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:0.505
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.126 colorectal cancer Near GREM1, we found using fine-mapping that the previously-identified associati... BeFree 21655089 Detail
0.003 colorectal carcinoma Near GREM1, we found using fine-mapping that the previously-identified associati... BeFree 21655089 Detail
0.012 colorectal carcinoma The intestine-specific transcription factor CDX2 and Wnt effector TCF7L2 bound n... BeFree 25131200 Detail
0.015 Colorectal Neoplasms The intestine-specific transcription factor CDX2 and Wnt effector TCF7L2 bound n... BeFree 25131200 Detail
0.121 Colorectal Neoplasms The intestine-specific transcription factor CDX2 and Wnt effector TCF7L2 bound n... BeFree 25131200 Detail
0.003 colorectal carcinoma The intestine-specific transcription factor CDX2 and Wnt effector TCF7L2 bound n... BeFree 25131200 Detail
0.011 colorectal carcinoma The intestine-specific transcription factor CDX2 and Wnt effector TCF7L2 bound n... BeFree 25131200 Detail
0.139 Colorectal Neoplasms The intestine-specific transcription factor CDX2 and Wnt effector TCF7L2 bound n... BeFree 25131200 Detail
0.126 colorectal cancer The intestine-specific transcription factor CDX2 and Wnt effector TCF7L2 bound n... BeFree 25131200 Detail
0.136 colorectal cancer The intestine-specific transcription factor CDX2 and Wnt effector TCF7L2 bound n... BeFree 25131200 Detail
0.013 colorectal cancer The intestine-specific transcription factor CDX2 and Wnt effector TCF7L2 bound n... BeFree 25131200 Detail
Annotation

Annotations

DescrptionSourceLinks
Near GREM1, we found using fine-mapping that the previously-identified association between tagSNP rs... DisGeNET Detail
Near GREM1, we found using fine-mapping that the previously-identified association between tagSNP rs... DisGeNET Detail
The intestine-specific transcription factor CDX2 and Wnt effector TCF7L2 bound near rs16969681, with... DisGeNET Detail
The intestine-specific transcription factor CDX2 and Wnt effector TCF7L2 bound near rs16969681, with... DisGeNET Detail
The intestine-specific transcription factor CDX2 and Wnt effector TCF7L2 bound near rs16969681, with... DisGeNET Detail
The intestine-specific transcription factor CDX2 and Wnt effector TCF7L2 bound near rs16969681, with... DisGeNET Detail
The intestine-specific transcription factor CDX2 and Wnt effector TCF7L2 bound near rs16969681, with... DisGeNET Detail
The intestine-specific transcription factor CDX2 and Wnt effector TCF7L2 bound near rs16969681, with... DisGeNET Detail
The intestine-specific transcription factor CDX2 and Wnt effector TCF7L2 bound near rs16969681, with... DisGeNET Detail
The intestine-specific transcription factor CDX2 and Wnt effector TCF7L2 bound near rs16969681, with... DisGeNET Detail
The intestine-specific transcription factor CDX2 and Wnt effector TCF7L2 bound near rs16969681, with... DisGeNET Detail
Gene
-
dbSNP
rs16969681 dbSNP
Genome
hg19
Position
chr15:32,993,111-32,993,111
Variant Type
snv
Reference Allele
C
Alternative Allele
T
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs16969681
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.5054
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
8470
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16760
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