chr1:157670816:A>G Detail (hg19)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr1:157,670,816-157,670,816 |
| hg38 | chr1:157,701,026-157,701,026 View the variant detail on this assembly version. |
HGVS
[No Data.]
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.383 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| 0.213 | rheumatoid arthritis | No associations were found for rs1800795 (IL-6), rs1800896 (IL-10) and rs7528684... | BeFree | 25566937 | Detail |
| 0.035 | rheumatoid arthritis | No associations were found for rs1800795 (IL-6), rs1800896 (IL-10) and rs7528684... | BeFree | 25566937 | Detail |
| 0.203 | rheumatoid arthritis | No associations were found for rs1800795 (IL-6), rs1800896 (IL-10) and rs7528684... | BeFree | 25566937 | Detail |
| 0.145 | Graves Disease | The AA genotype of PTPN22 rs3789604 and AA genotype of FCRL3 rs7528684 were corr... | BeFree | 19438904 | Detail |
| <0.001 | neuromyelitis optica | The Fc Receptor-Like 3 Polymorphisms (rs7528684, rs945635, rs3761959 and rs22822... | BeFree | 26402798 | Detail |
| 0.228 | Graves Disease | These preliminary results demonstrate that the immune-regulatory gene CTLA-4 and... | BeFree | 19438904 | Detail |
| 0.035 | rheumatoid arthritis | We found some evidence for an association of either rs7528684/fcrl3_3 or rs37928... | BeFree | 18087673 | Detail |
| 0.249 | Graves Disease | Above data indicated that FCRL3 gene and its proxy SNP rs7528684 may be involved... | BeFree | 23505439 | Detail |
| 0.010 | Diabetes Mellitus, Insulin-Dependent | [Genome-wide association analysis of autoantibody positivity in type 1 diabetes ... | GAD | 21829393 | Detail |
| 0.013 | Autoimmune Diseases | The Fcrl3 -169T>C (rs7528684) polymorphism has been shown to be a risk factor... | BeFree | 24593204 | Detail |
| 0.234 | ulcerative colitis | Our aim was to study the role of two promoter SNPs of the FCRL3 gene (-169A>G... | BeFree | 17389014 | Detail |
| 0.010 | Inflammatory Bowel Diseases | Our aim was to study the role of two promoter SNPs of the FCRL3 gene (-169A>G... | BeFree | 17389014 | Detail |
| 0.397 | Inflammatory Bowel Diseases | Our aim was to study the role of two promoter SNPs of the FCRL3 gene (-169A>G... | BeFree | 17389014 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| No associations were found for rs1800795 (IL-6), rs1800896 (IL-10) and rs7528684 (FCRL3) in the tota... | DisGeNET | Detail |
| No associations were found for rs1800795 (IL-6), rs1800896 (IL-10) and rs7528684 (FCRL3) in the tota... | DisGeNET | Detail |
| No associations were found for rs1800795 (IL-6), rs1800896 (IL-10) and rs7528684 (FCRL3) in the tota... | DisGeNET | Detail |
| The AA genotype of PTPN22 rs3789604 and AA genotype of FCRL3 rs7528684 were correlated with a reduce... | DisGeNET | Detail |
| The Fc Receptor-Like 3 Polymorphisms (rs7528684, rs945635, rs3761959 and rs2282284) and The Risk of ... | DisGeNET | Detail |
| These preliminary results demonstrate that the immune-regulatory gene CTLA-4 and the thyroid-specifi... | DisGeNET | Detail |
| We found some evidence for an association of either rs7528684/fcrl3_3 or rs3792876/slc2F2 with RA; h... | DisGeNET | Detail |
| Above data indicated that FCRL3 gene and its proxy SNP rs7528684 may be involved in the pathogenesis... | DisGeNET | Detail |
| [Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.] | DisGeNET | Detail |
| The Fcrl3 -169T>C (rs7528684) polymorphism has been shown to be a risk factor of various autoimmu... | DisGeNET | Detail |
| Our aim was to study the role of two promoter SNPs of the FCRL3 gene (-169A>G, rs7528684 and -110... | DisGeNET | Detail |
| Our aim was to study the role of two promoter SNPs of the FCRL3 gene (-169A>G, rs7528684 and -110... | DisGeNET | Detail |
| Our aim was to study the role of two promoter SNPs of the FCRL3 gene (-169A>G, rs7528684 and -110... | DisGeNET | Detail |
- Gene
- -
- dbSNP
- rs7528684 dbSNP
- Genome
- hg19
- Position
- chr1:157,670,816-157,670,816
- Variant Type
- snv
- Reference Allele
- A
- Alternative Allele
- G
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs7528684
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.383
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 6419
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
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