ENST00000324677.12 SSH2
Information
- Transcript ID
- ENST00000324677.12
- Genome
- hg38
- Position
- chr17:29,673,840-29,761,390
- Strand
- -
- CDS length
- 609
- Amino acid length
- 203
- Gene symbol
- SSH2
- Gene type
- protein-coding
- Gene description
- slingshot protein phosphatase 2
- Gene Entrez Gene ID
- 85464
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 7 | 29,673,840 | 29,674,159 |
| 6 | 29,676,820 | 29,676,885 |
| 5 | 29,677,673 | 29,677,741 |
| 4 | 29,684,563 | 29,684,684 |
| 3 | 29,695,459 | 29,695,523 |
| 2 | 29,702,959 | 29,703,062 |
| 1 | 29,761,150 | 29,761,390 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 7 | CDS | 29,674,105 | 29,674,159 |
| 6 | CDS | 29,676,820 | 29,676,885 |
| 5 | CDS | 29,677,673 | 29,677,741 |
| 4 | CDS | 29,684,563 | 29,684,684 |
| 3 | CDS | 29,695,459 | 29,695,523 |
| 2 | CDS | 29,702,959 | 29,703,062 |
| 1 | CDS | 29,761,150 | 29,761,277 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg19 | chr17 | 28,000,858 | 28,088,408 | Link |
CDS sequence
ATGACCCTGAGCACGTTGGCCCGCAAGAGGAAGGCGCCCCTCGCTTGCACCTGCAGCCTCGGTGGCCCCGACATGATTCCTTACTTCTCCGCCAACGCGGTCATCTCGCAGAACGCCATCAACCAGCTCATCAGCGAGAGCTTTCTAACTGTCAAAGGTGCTGCCCTTTTTCTACCACGGGGAAATGGCTCATCCACACCAAGAATCAGCCACAGACGGAACAAGCATGCAGGCGATCTCCAACAGCATCTCCAAGCAATGTTCATTTTACTCCGCCCAGAAGACAACATCAGGCTGGCTGTAAGACTGGAAAGTACTTACCAGAATCGAACACGCTATATGGTAGTGGTTTCAACTAATGGTAGACAAGACACTGAAGAAAGCATCGTCCTAGGAATGGATTTCTCCTCTAATGACAGTAGCACTTGTACCATGGGCTTAGTTTTGCCTCTCTGGAGCGACACGCTAATTCATTTGGATGGTGATGGTGGGTTCAGTGTATCGACGGATAACAGAGTTCACATATTCAAACCTGTATCTGTGCAGGCAATGTGGGTTGACAGGGATTCAAGGAACAAACACTGTGATGTACTATTGGTGGAAGAATGA
Amino sequence
MTLSTLARKRKAPLACTCSLGGPDMIPYFSANAVISQNAINQLISESFLTVKGAALFLPRGNGSSTPRISHRRNKHAGDLQQHLQAMFILLRPEDNIRLAVRLESTYQNRTRYMVVVSTNGRQDTEESIVLGMDFSSNDSSTCTMGLVLPLWSDTLIHLDGDGGFSVSTDNRVHIFKPVSVQAMWVDRDSRNKHCDVLLVEE*