ENST00000324677.12 SSH2

Information
Transcript ID
ENST00000324677.12
Genome
hg19
Position
chr17:28,000,858-28,088,408
Strand
-
CDS length
609
Amino acid length
203
Gene symbol
SSH2
Gene type
protein-coding
Gene description
slingshot protein phosphatase 2
Gene Entrez Gene ID
85464
Variants

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Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
7 28,000,858 28,001,177
6 28,003,838 28,003,903
5 28,004,691 28,004,759
4 28,011,581 28,011,702
3 28,022,477 28,022,541
2 28,029,977 28,030,080
1 28,088,168 28,088,408
CDS
Exon number Type Start Stop
7 CDS 28,001,123 28,001,177
6 CDS 28,003,838 28,003,903
5 CDS 28,004,691 28,004,759
4 CDS 28,011,581 28,011,702
3 CDS 28,022,477 28,022,541
2 CDS 28,029,977 28,030,080
1 CDS 28,088,168 28,088,295
Other genome
Genome Chromosome Start End Links
hg38 chr17 29,673,840 29,761,390 Link
CDS sequence
ATGACCCTGAGCACGTTGGCCCGCAAGAGGAAGGCGCCCCTCGCTTGCACCTGCAGCCTCGGTGGCCCCGACATGATTCCTTACTTCTCCGCCAACGCGGTCATCTCGCAGAACGCCATCAACCAGCTCATCAGCGAGAGCTTTCTAACTGTCAAAGGTGCTGCCCTTTTTCTACCACGGGGAAATGGCTCATCCACACCAAGAATCAGCCACAGACGGAACAAGCATGCAGGCGATCTCCAACAGCATCTCCAAGCAATGTTCATTTTACTCCGCCCAGAAGACAACATCAGGCTGGCTGTAAGACTGGAAAGTACTTACCAGAATCGAACACGCTATATGGTAGTGGTTTCAACTAATGGTAGACAAGACACTGAAGAAAGCATCGTCCTAGGAATGGATTTCTCCTCTAATGACAGTAGCACTTGTACCATGGGCTTAGTTTTGCCTCTCTGGAGCGACACGCTAATTCATTTGGATGGTGATGGTGGGTTCAGTGTATCGACGGATAACAGAGTTCACATATTCAAACCTGTATCTGTGCAGGCAATGTGGGTTGACAGGGATTCAAGGAACAAACACTGTGATGTACTATTGGTGGAAGAATGA
Amino sequence
MTLSTLARKRKAPLACTCSLGGPDMIPYFSANAVISQNAINQLISESFLTVKGAALFLPRGNGSSTPRISHRRNKHAGDLQQHLQAMFILLRPEDNIRLAVRLESTYQNRTRYMVVVSTNGRQDTEESIVLGMDFSSNDSSTCTMGLVLPLWSDTLIHLDGDGGFSVSTDNRVHIFKPVSVQAMWVDRDSRNKHCDVLLVEE*