ENST00000581540.5 SUPT4H1

Information
Transcript ID
ENST00000581540.5
Genome
hg19
Position
chr17:56,423,377-56,429,022
Strand
-
CDS length
327
Amino acid length
109
Gene symbol
SUPT4H1
Gene type
protein-coding
Gene description
SPT4 homolog, DSIF elongation factor subunit
Gene Entrez Gene ID
6827
Variants

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Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
4 56,423,377 56,423,674
3 56,424,549 56,424,602
2 56,424,890 56,424,945
1 56,428,763 56,429,022
CDS
Exon number Type Start Stop
4 CDS 56,423,607 56,423,674
3 CDS 56,424,549 56,424,602
2 CDS 56,424,890 56,424,945
1 CDS 56,428,763 56,428,911
Other genome
Genome Chromosome Start End Links
hg38 chr17 58,346,016 58,351,661 Link
CDS sequence
ATGCTTATCTCTCCTTTTCCTTTATTTTTCTTTCACTCCCAGACTATAGACCAGTTTGAATATGATGGTTGTGACAATTGTGATGCATATCTACAAATGAAGGGTAACCGAGAGATGGTATATGACTGCACTAGCTCTTCCTTTGATGGAATCATTGCGATGATGAGTCCAGAGGACAGCTGGGTCTCCAAGTGGCAGCGAGTCAGTAACTTTAAGCCAGGTGTATATGCGGTGTCAGTCACTGGTCGCCTGCCCCAAGGAATCGTGCGGGAGCTGAAAAGTCGAGGAGTGGCCTACAAATCCAGAGACACAGCTATAAAGACCTAG
Amino sequence
MLISPFPLFFFHSQTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAYKSRDTAIKT*