VSTM1 V-set and transmembrane domain containing 1
Information
- Symbol
- VSTM1
- Type
- protein-coding
- Description
- V-set and transmembrane domain containing 1
- Entrez Gene ID
- 284415
- Genome
- hg19
- Position
- chr19:54,544,079-54,567,151
- Genome
- hg38
- Position
- chr19:54,040,825-54,063,897
- MIM
- 616804 OMIM
- HGNC
- HGNC:29455 HGNC
- Ensembl
- ENSG00000189068 Ensembl
- Links
- NCBI Gene Cards OncoKB
Clinical Significance
| MGeND | ClinVar | |
|---|---|---|
| Likely benign | 0 | 2 |
| Uncertain significance | 0 | 36 |
Ranking
| ClinVar | |
|---|---|
 |
0 |
 |
0 |
 |
0 |
 |
38 |
 |
0 |
Frequency
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
Disease area statistics
[No Data.]
Locus Zoom
Variants
Search Word
| Target data | : |
MGeND data only
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| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
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| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
| Type | ID |
|---|---|
| SYNONYM | SIRL-1 |
| SYNONYM | SIRL1 |
| SYNONYM | UNQ3033 |
| MIM | 616804 OMIM |
| HGNC | HGNC:29455 HGNC |
| Ensembl | ENSG00000189068 Ensembl |
| AllianceGenome | HGNC:29455 |
| Descrption | Source | Links |
|---|
| ID | Genome | Chromosome | Start | End | Length |
|---|---|---|---|---|---|
| ENST00000425006.3 | hg38 | chr19 | 54,048,366 | 54,063,953 | 15,588 |
| ENST00000338372.7 | hg38 | chr19 | 54,040,825 | 54,063,897 | 23,073 |
| ENST00000376626.5 | hg38 | chr19 | 54,040,833 | 54,063,953 | 23,121 |
| ENST00000366170.6 | hg38 | chr19 | 54,040,834 | 54,063,953 | 23,120 |
| ENST00000338372.7 | hg19 | chr19 | 54,544,079 | 54,567,151 | 23,073 |
| ENST00000376626.5 | hg19 | chr19 | 54,544,087 | 54,567,207 | 23,121 |
| ENST00000366170.6 | hg19 | chr19 | 54,544,088 | 54,567,207 | 23,120 |
| ENST00000425006.3 | hg19 | chr19 | 54,551,620 | 54,567,207 | 15,588 |
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