chrX:12906102:T>C Detail (hg38)

Information

Genome

Assembly Position
hg19 chrX:12,924,221-12,924,221 View the variant detail on this assembly version.
hg38 chrX:12,906,102-12,906,102

HGVS

[No Data.]
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:0.971
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.004 rheumatoid arthritis One Turkish study showed a significant difference between TLR9 rs187084 allele f... BeFree 23420357 Detail
0.004 rheumatoid arthritis A significant difference between TLR9 rs187084 allele frequencies in RA patients... BeFree 23325096 Detail
Annotation

Annotations

DescrptionSourceLinks
One Turkish study showed a significant difference between TLR9 rs187084 allele frequencies and rheum... DisGeNET Detail
A significant difference between TLR9 rs187084 allele frequencies in RA patients and controls was fo... DisGeNET Detail

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs5741883 dbSNP
Genome
hg38
Position
chrX:12,906,102-12,906,102
Variant Type
snv
Reference Allele
T
Alternative Allele
C
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs5741883
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.971
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
12470
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
12842
Genome browser