chr9:117702866:T>C Detail (hg38)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr9:120,465,144-120,465,144 View the variant detail on this assembly version. |
| hg38 | chr9:117,702,866-117,702,866 |
HGVS
[No Data.]
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.239 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| 0.003 | Helicobacter pylori infection | TLR4 rs10759932 decreased the risk of H. pylori infection (OR: 0.59, 95% CI: 0.4... | BeFree | 24929142 | Detail |
| <0.001 | bacterial vaginosis | After adjustment for race, smoking, and bacterial vaginosis, carriage of these a... | BeFree | 18928988 | Detail |
| 0.001 | precancerous lesions | TLR4 rs10759932 TC and C carriers were associated with a lower risk in developin... | BeFree | 24269697 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| TLR4 rs10759932 decreased the risk of H. pylori infection (OR: 0.59, 95% CI: 0.41-0.86). | DisGeNET | Detail |
| After adjustment for race, smoking, and bacterial vaginosis, carriage of these alleles was associate... | DisGeNET | Detail |
| TLR4 rs10759932 TC and C carriers were associated with a lower risk in developing precancerous lesio... | DisGeNET | Detail |
- Gene
- -
- dbSNP
- rs10759932 dbSNP
- Genome
- hg38
- Position
- chr9:117,702,866-117,702,866
- Variant Type
- snv
- Reference Allele
- T
- Alternative Allele
- C
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs10759932
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.2393
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 4011
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
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