chr6:32634492:G>T Detail (hg38)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr6:32,602,269-32,602,269 View the variant detail on this assembly version. |
| hg38 | chr6:32,634,492-32,634,492 |
HGVS
[No Data.]
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.140 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| 0.051 | rheumatoid arthritis | Among these associations, we found that 8 single-nucleotide polymorphisms (SNP; ... | BeFree | 23678157 | Detail |
| 0.123 | rheumatoid arthritis | Among these associations, we found that 8 single-nucleotide polymorphisms (SNP; ... | BeFree | 23678157 | Detail |
| 0.128 | rheumatoid arthritis | Among these associations, we found that 8 single-nucleotide polymorphisms (SNP; ... | BeFree | 23678157 | Detail |
| 0.123 | rheumatoid arthritis | Association of HLA-DQA1 (rs9272219) with susceptibility to rheumatoid arthritis ... | BeFree | 25550865 | Detail |
| 0.007 | schizophrenia | [Common variants on chromosome 6p22.1 are associated with schizophrenia.] | GAD | 19571809 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| Among these associations, we found that 8 single-nucleotide polymorphisms (SNP; rs1600249, rs2736340... | DisGeNET | Detail |
| Among these associations, we found that 8 single-nucleotide polymorphisms (SNP; rs1600249, rs2736340... | DisGeNET | Detail |
| Among these associations, we found that 8 single-nucleotide polymorphisms (SNP; rs1600249, rs2736340... | DisGeNET | Detail |
| Association of HLA-DQA1 (rs9272219) with susceptibility to rheumatoid arthritis in a Han Chinese pop... | DisGeNET | Detail |
| [Common variants on chromosome 6p22.1 are associated with schizophrenia.] | DisGeNET | Detail |
- Gene
- -
- dbSNP
- rs9272219 dbSNP
- Genome
- hg38
- Position
- chr6:32,634,492-32,634,492
- Variant Type
- snv
- Reference Allele
- G
- Alternative Allele
- T
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs9272219
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.1403
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 2352
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
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