chr17:27783810:T>A Detail (hg38) (NOS2)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr17:26,110,836-26,110,836 View the variant detail on this assembly version. |
| hg38 | chr17:27,783,810-27,783,810 |
HGVS
| Type | Transcript | Protein |
|---|---|---|
| RefSeq | NM_000625.4:c.468-704A>T | |
| Ensemble | ENST00000313735.11:c.468-704A>T | |
| ENST00000646938.1:c.465-704A>T |
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.066 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| <0.001 | Active tuberculosis | Multilocus analyses between polymorphisms in SLC11A1 and 11 TB candidate genes d... | BeFree | 19723394 | Detail |
| <0.001 | Active tuberculosis | Multilocus analyses between polymorphisms in SLC11A1 and 11 TB candidate genes d... | BeFree | 19723394 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| Multilocus analyses between polymorphisms in SLC11A1 and 11 TB candidate genes detected interactions... | DisGeNET | Detail |
| Multilocus analyses between polymorphisms in SLC11A1 and 11 TB candidate genes detected interactions... | DisGeNET | Detail |
Overlapped Transcript
| Gene | Transcript ID | Chromosome | Start | Stop | Links |
|---|
- Gene
- -
- dbSNP
- rs17722851 dbSNP
- Genome
- hg38
- Position
- chr17:27,783,810-27,783,810
- Variant Type
- snv
- Reference Allele
- T
- Alternative Allele
- A
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs17722851
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.0658
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 1103
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
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