chr15:81290798:G>T Detail (hg38) (IL16)
Information
Genome
Assembly | Position |
---|---|
hg19 | chr15:81,583,139-81,583,139 View the variant detail on this assembly version. |
hg38 | chr15:81,290,798-81,290,798 |
HGVS
Type | Transcript | Protein |
---|---|---|
RefSeq | NM_172217.3:c.1561+258G>T | |
NM_001172128.1:c.1420+258G>T | ||
Ensemble | ENST00000302987.10:c.1561+258G>T |
Summary
MGeND
Clinical significance | |
Variant entry | |
GWAS entry | |
Disease area statistics | Show details |
Frequency
JP | HGVD:[No Data.] |
ToMMo:0.421 | |
NCBN:[No Data.] | |
NCBN(Hondo):[No Data.] | |
NCBN(Ryukyu):[No Data.] | |
East asia | ExAC:[No Data.] |
Prediction
ClinVar
Clinical Significance | |
Review star | [No Data.] |
Show details |
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score | Disease name | Description | Source | Pubmed | Links |
---|---|---|---|---|---|
<0.001 | Carcinoma of lung | CART analyses did not yield a tree structure for overall survival; separate CART... | BeFree | 25597281 | Detail |
0.044 | Malignant neoplasm of lung | CART analyses did not yield a tree structure for overall survival; separate CART... | BeFree | 25597281 | Detail |
<0.001 | Carcinoma of lung | CART analyses did not yield a tree structure for overall survival; separate CART... | BeFree | 25597281 | Detail |
0.005 | Carcinoma of lung | CART analyses did not yield a tree structure for overall survival; separate CART... | BeFree | 25597281 | Detail |
0.008 | Malignant neoplasm of lung | CART analyses did not yield a tree structure for overall survival; separate CART... | BeFree | 25597281 | Detail |
0.005 | Malignant neoplasm of lung | CART analyses did not yield a tree structure for overall survival; separate CART... | BeFree | 25597281 | Detail |
<0.001 | Carcinoma of lung | CART analyses did not yield a tree structure for overall survival; separate CART... | BeFree | 25597281 | Detail |
0.010 | Malignant neoplasm of lung | CART analyses did not yield a tree structure for overall survival; separate CART... | BeFree | 25597281 | Detail |
Annotation
Annotations
Descrption | Source | Links |
---|---|---|
CART analyses did not yield a tree structure for overall survival; separate CART tree structures wer... | DisGeNET | Detail |
CART analyses did not yield a tree structure for overall survival; separate CART tree structures wer... | DisGeNET | Detail |
CART analyses did not yield a tree structure for overall survival; separate CART tree structures wer... | DisGeNET | Detail |
CART analyses did not yield a tree structure for overall survival; separate CART tree structures wer... | DisGeNET | Detail |
CART analyses did not yield a tree structure for overall survival; separate CART tree structures wer... | DisGeNET | Detail |
CART analyses did not yield a tree structure for overall survival; separate CART tree structures wer... | DisGeNET | Detail |
CART analyses did not yield a tree structure for overall survival; separate CART tree structures wer... | DisGeNET | Detail |
CART analyses did not yield a tree structure for overall survival; separate CART tree structures wer... | DisGeNET | Detail |
Overlapped Transcript
Gene | Transcript ID | Chromosome | Start | Stop | Links |
---|
- Gene
- -
- dbSNP
- rs7170924 dbSNP
- Genome
- hg38
- Position
- chr15:81,290,798-81,290,798
- Variant Type
- snv
- Reference Allele
- G
- Alternative Allele
- T
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs7170924
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.4215
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 7064
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
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