chr14:73198060:C>T Detail (hg38) (PSEN1)

Go to:

Summary
Information
Links
Disease area statistics
MGeND
ClinVar
CIViC
DisGeNET
Annotation
Genome browser

Information

Genome

Assembly	Position
hg19	chr14:73,664,768-73,664,768 View the variant detail on this assembly version.
hg38	chr14:73,198,060-73,198,060

HGVS

PSEN1

Type	Transcript	Protein
RefSeq	NM_000021.3:c.799C>T	NP_000012.1:p.Pro267Ser
	NM_007318.2:c.799C>T	NP_015557.2:p.Pro267Ser
Ensemble	ENST00000324501.10:c.799C>T	ENST00000324501.10:p.Pro267Ser
	ENST00000357710.8:c.787C>T	ENST00000357710.8:p.Pro263Ser
	ENST00000394164.5:c.787C>T	ENST00000394164.5:p.Pro263Ser
	ENST00000553599.6:c.787C>T	ENST00000553599.6:p.Pro263Ser
	ENST00000554131.6:c.799C>T	ENST00000554131.6:p.Pro267Ser
	ENST00000556951.6:c.787C>T	ENST00000556951.6:p.Pro263Ser
	ENST00000557293.6:c.679C>T	ENST00000557293.6:p.Pro227Ser
	ENST00000557511.5:c.799C>T	ENST00000557511.5:p.Pro267Ser
	ENST00000700265.1:c.787C>T	ENST00000700265.1:p.Pro263Ser
	ENST00000700267.1:c.799C>T	ENST00000700267.1:p.Pro267Ser
	ENST00000700268.1:c.799C>T	ENST00000700268.1:p.Pro267Ser
	ENST00000700269.1:c.799C>T	ENST00000700269.1:p.Pro267Ser
	ENST00000700271.1:c.787C>T	ENST00000700271.1:p.Pro263Ser
	ENST00000700273.1:c.787C>T	ENST00000700273.1:p.Pro263Ser
	ENST00000700306.1:c.799C>T	ENST00000700306.1:p.Pro267Ser
	ENST00000700307.1:c.769+5196C>T
	ENST00000700312.1:c.550C>T	ENST00000700312.1:p.Pro184Ser
	ENST00000700313.1:c.787C>T	ENST00000700313.1:p.Pro263Ser
	ENST00000700317.1:c.799C>T	ENST00000700317.1:p.Pro267Ser
	ENST00000700320.1:c.826C>T	ENST00000700320.1:p.Pro276Ser
	ENST00000700321.1:c.799C>T	ENST00000700321.1:p.Pro267Ser
	ENST00000700322.1:c.787C>T	ENST00000700322.1:p.Pro263Ser
	ENST00000700323.1:c.799C>T	ENST00000700323.1:p.Pro267Ser
	ENST00000700324.1:c.787C>T	ENST00000700324.1:p.Pro263Ser
	ENST00000700375.1:c.799C>T	ENST00000700375.1:p.Pro267Ser
	ENST00000700378.1:c.799C>T	ENST00000700378.1:p.Pro267Ser
	ENST00000700389.1:c.787C>T	ENST00000700389.1:p.Pro263Ser
	ENST00000700437.1:c.550C>T	ENST00000700437.1:p.Pro184Ser
	ENST00000700468.1:c.757+5196C>T
	ENST00000700469.1:c.787C>T	ENST00000700469.1:p.Pro263Ser

Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics	Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance	Likely pathogenic
Review star
Show details

Links

PSEN1

Type	Database	ID	Link
Gene	MIM	104311	OMIM
	HGNC	9508	HGNC
	Ensembl	ENSG00000080815	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar
	COSMIC
	MONDO

Disease area statistics

[No Data.]

MGeND

[No Data.]

ClinVar

Clinical significance	Last evaluated	Review status	Condition	Origin	Links
Pathogenic	1995-10-01	no assertion criteria provided	Alzheimer disease 3	germline	Detail
Likely pathogenic	2016-11-02	criteria provided, single submitter	not provided	germline not provided	Detail

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.320	Alzheimer disease, familial, type 3	NA	CLINVAR		Detail

Annotation

Annotations

Descrption	Source	Links
NM_000021.4(PSEN1):c.799C>T (p.Pro267Ser) AND Alzheimer disease 3	ClinVar	Detail
NM_000021.4(PSEN1):c.799C>T (p.Pro267Ser) AND not provided	ClinVar	Detail
NA	DisGeNET	Detail

Overlapped Transcript Coordinates

Gene	Transcript ID	Exon Number	Chromosome	Start	Stop	Type	Amino Mutation	Transcript Position	Links

Overlapped Transcript

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs63751229 dbSNP
Genome: hg38
Position: chr14:73,198,060-73,198,060
Variant Type: snv
Reference Allele: C
Alternative Allele: T

Genome browser