chr13:108269025:C>T Detail (hg38)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr13:108,921,373-108,921,373 View the variant detail on this assembly version. |
| hg38 | chr13:108,269,025-108,269,025 |
HGVS
[No Data.]
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.447 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| <0.001 | T-Cell Lymphoma | Furthermore, we observed cumulative effects of Dicer rs3742330 and BAFF rs951482... | BeFree | 23251602 | Detail |
| <0.001 | Mixed cryoglobulinemia | Association of BAFF -871C/T Promoter Polymorphism with Hepatitis C-Related Mixed... | BeFree | 25800158 | Detail |
| <0.001 | hepatitis C | Association of BAFF -871C/T Promoter Polymorphism with Hepatitis C-Related Mixed... | BeFree | 25800158 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| Furthermore, we observed cumulative effects of Dicer rs3742330 and BAFF rs9514828 on TCL survival. | DisGeNET | Detail |
| Association of BAFF -871C/T Promoter Polymorphism with Hepatitis C-Related Mixed Cryoglobulinemia in... | DisGeNET | Detail |
| Association of BAFF -871C/T Promoter Polymorphism with Hepatitis C-Related Mixed Cryoglobulinemia in... | DisGeNET | Detail |
- Gene
- -
- dbSNP
- rs9514828 dbSNP
- Genome
- hg38
- Position
- chr13:108,269,025-108,269,025
- Variant Type
- snv
- Reference Allele
- C
- Alternative Allele
- T
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs9514828
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.4472
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 7495
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
Genome browser