chr12:114656455:A>G Detail (hg38)

Information

Genome

Assembly Position
hg19 chr12:115,094,260-115,094,260 View the variant detail on this assembly version.
hg38 chr12:114,656,455-114,656,455

HGVS

[No Data.]
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:0.386
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.262 Malignant neoplasm of prostate The genotypes of 4 single nucleotide polymorphisms previously associated with se... BeFree 23246478 Detail
0.080 prostate carcinoma The genotypes of 4 single nucleotide polymorphisms previously associated with se... BeFree 23246478 Detail
Annotation

Annotations

DescrptionSourceLinks
The genotypes of 4 single nucleotide polymorphisms previously associated with serum prostate specifi... DisGeNET Detail
The genotypes of 4 single nucleotide polymorphisms previously associated with serum prostate specifi... DisGeNET Detail
Gene
-
dbSNP
rs11067228 dbSNP
Genome
hg38
Position
chr12:114,656,455-114,656,455
Variant Type
snv
Reference Allele
A
Alternative Allele
G
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs11067228
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.3861
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
6471
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16760
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