chr11:27724217:C>T Detail (hg38)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr11:27,745,764-27,745,764 View the variant detail on this assembly version. |
| hg38 | chr11:27,724,217-27,724,217 |
HGVS
[No Data.]
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.033 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| 0.017 | Mental disorders | Two hundred and six patients with Diagnostic and Statistical Manual of Mental Di... | BeFree | 21188787 | Detail |
| 0.120 | Mental Depression | Two hundred and six patients with Diagnostic and Statistical Manual of Mental Di... | BeFree | 21188787 | Detail |
| 0.248 | depressive disorder | Two hundred and six patients with Diagnostic and Statistical Manual of Mental Di... | BeFree | 21188787 | Detail |
| <0.001 | Completed Suicide | Since our previous work on completed suicide in Slavic population showed an asso... | BeFree | 26115627 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| Two hundred and six patients with Diagnostic and Statistical Manual of Mental Disorders-IV MDD were ... | DisGeNET | Detail |
| Two hundred and six patients with Diagnostic and Statistical Manual of Mental Disorders-IV MDD were ... | DisGeNET | Detail |
| Two hundred and six patients with Diagnostic and Statistical Manual of Mental Disorders-IV MDD were ... | DisGeNET | Detail |
| Since our previous work on completed suicide in Slavic population showed an association of the funct... | DisGeNET | Detail |
- Gene
- -
- dbSNP
- rs908867 dbSNP
- Genome
- hg38
- Position
- chr11:27,724,217-27,724,217
- Variant Type
- snv
- Reference Allele
- C
- Alternative Allele
- T
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs908867
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.0332
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 556
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16758
Genome browser