chr11:27723312:T>C Detail (hg38)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr11:27,744,859-27,744,859 View the variant detail on this assembly version. |
| hg38 | chr11:27,723,312-27,723,312 |
HGVS
[No Data.]
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.003 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| <0.001 | Common Migraine | Five SNPs in the BDNF locus (rs1519480, rs6265, rs712507, rs2049046, and rs12273... | BeFree | 24708359 | Detail |
| <0.001 | migraine with aura | Five SNPs in the BDNF locus (rs1519480, rs6265, rs712507, rs2049046, and rs12273... | BeFree | 24708359 | Detail |
| 0.017 | Mental disorders | Two hundred and six patients with Diagnostic and Statistical Manual of Mental Di... | BeFree | 21188787 | Detail |
| 0.120 | Mental Depression | Two hundred and six patients with Diagnostic and Statistical Manual of Mental Di... | BeFree | 21188787 | Detail |
| 0.248 | depressive disorder | Two hundred and six patients with Diagnostic and Statistical Manual of Mental Di... | BeFree | 21188787 | Detail |
| <0.001 | Completed Suicide | Since our previous work on completed suicide in Slavic population showed an asso... | BeFree | 26115627 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| Five SNPs in the BDNF locus (rs1519480, rs6265, rs712507, rs2049046, and rs12273363) were genotyped ... | DisGeNET | Detail |
| Five SNPs in the BDNF locus (rs1519480, rs6265, rs712507, rs2049046, and rs12273363) were genotyped ... | DisGeNET | Detail |
| Two hundred and six patients with Diagnostic and Statistical Manual of Mental Disorders-IV MDD were ... | DisGeNET | Detail |
| Two hundred and six patients with Diagnostic and Statistical Manual of Mental Disorders-IV MDD were ... | DisGeNET | Detail |
| Two hundred and six patients with Diagnostic and Statistical Manual of Mental Disorders-IV MDD were ... | DisGeNET | Detail |
| Since our previous work on completed suicide in Slavic population showed an association of the funct... | DisGeNET | Detail |
- Gene
- -
- dbSNP
- rs12273363 dbSNP
- Genome
- hg38
- Position
- chr11:27,723,312-27,723,312
- Variant Type
- snv
- Reference Allele
- T
- Alternative Allele
- C
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs12273363
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.0027
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 46
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16758
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