chr11:27678578:C>T Detail (hg38) (BDNF)
Information
Genome
Assembly | Position |
---|---|
hg19 | chr11:27,700,125-27,700,125 View the variant detail on this assembly version. |
hg38 | chr11:27,678,578-27,678,578 |
HGVS
Type | Transcript | Protein |
---|---|---|
RefSeq | NM_170731.4:c.4-19993G>A | |
NM_001709.4:c.-21-19993G>A | ||
NM_001143806.1:c.-21-19993G>A |
Summary
MGeND
Clinical significance | |
Variant entry | |
GWAS entry | |
Disease area statistics | Show details |
Frequency
JP | HGVD:[No Data.] |
ToMMo:0.596 | |
NCBN:[No Data.] | |
NCBN(Hondo):[No Data.] | |
NCBN(Ryukyu):[No Data.] | |
East asia | ExAC:[No Data.] |
Prediction
ClinVar
Clinical Significance | |
Review star | [No Data.] |
Show details |
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score | Disease name | Description | Source | Pubmed | Links |
---|---|---|---|---|---|
0.120 | Mental Depression | However, BDNF rs7103411 and rs6265 similarly predicted worse treatment response ... | BeFree | 19236730 | Detail |
0.248 | depressive disorder | However, BDNF rs7103411 and rs6265 similarly predicted worse treatment response ... | BeFree | 19236730 | Detail |
0.108 | attention deficit hyperactivity disorder | [For overt aggressive impulsivity nominal significance was shown for 6 SNPs from... | GAD | 18937842 | Detail |
Annotation
Annotations
Descrption | Source | Links |
---|---|---|
However, BDNF rs7103411 and rs6265 similarly predicted worse treatment response over 6 wk in clinica... | DisGeNET | Detail |
However, BDNF rs7103411 and rs6265 similarly predicted worse treatment response over 6 wk in clinica... | DisGeNET | Detail |
[For overt aggressive impulsivity nominal significance was shown for 6 SNPs from BDNF, DRD4, HTR1E, ... | DisGeNET | Detail |
Overlapped Transcript
Gene | Transcript ID | Chromosome | Start | Stop | Links |
---|
- Gene
- -
- dbSNP
- rs7103411 dbSNP
- Genome
- hg38
- Position
- chr11:27,678,578-27,678,578
- Variant Type
- snv
- Reference Allele
- C
- Alternative Allele
- T
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs7103411
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.5965
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 9996
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16758
Genome browser