chr11:108250804:C>T Detail (hg38) (ATM)

Information

Genome

Assembly Position
hg19 chr11:108,121,531-108,121,531 View the variant detail on this assembly version.
hg38 chr11:108,250,804-108,250,804

HGVS

Type Transcript Protein
RefSeq NM_000051.3:c.1339C>T NP_000042.3:p.Arg447Ter
NM_001351834.1:c.1339C>T NP_001338763.1:p.Arg447Ter
Ensemble ENST00000278616.10:c.1339C>T ENST00000278616.10:p.Arg447Ter
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:[No Data.]
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:<0.001

Prediction

ClinVar

Clinical Significance Pathogenic Likely pathogenic
Review star
Show details
Links
Type Database ID Link
Gene MIM 607585 OMIM
HGNC 795 HGNC
Ensembl ENSG00000149311 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar
COSMIC COSM3733240 COSMIC
MONDO
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
Clinical significance Last evaluated Review status Condition Origin Links
Pathogenic 2023-06-27 criteria provided, multiple submitters, no conflicts Hereditary cancer-predisposing syndrome germline Detail
Pathogenic Likely pathogenic 2024-01-03 criteria provided, multiple submitters, no conflicts Ataxia-telangiectasia syndrome germline unknown Detail
Pathogenic 2023-02-01 criteria provided, multiple submitters, no conflicts not provided germline unknown Detail
Pathogenic 2018-10-08 criteria provided, single submitter Ataxia-telangiectasia syndrome,Breast cancer, susceptibility to germline Detail
Pathogenic 2018-10-08 criteria provided, single submitter Ataxia-telangiectasia syndrome,Breast cancer, susceptibility to germline Detail
Pathogenic 2021-07-01 no assertion criteria provided Gastric cancer germline Detail
Pathogenic 2024-01-16 criteria provided, multiple submitters, no conflicts Familial cancer of breast unknown Detail
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.709 ataxia telangiectasia NA CLINVAR Detail
0.120 Neoplastic Syndromes, Hereditary NA CLINVAR Detail
Annotation

Annotations

DescrptionSourceLinks
NM_000051.4(ATM):c.1339C>T (p.Arg447Ter) AND Hereditary cancer-predisposing syndrome ClinVar Detail
NM_000051.4(ATM):c.1339C>T (p.Arg447Ter) AND Ataxia-telangiectasia syndrome ClinVar Detail
NM_000051.4(ATM):c.1339C>T (p.Arg447Ter) AND not provided ClinVar Detail
NM_000051.4(ATM):c.1339C>T (p.Arg447Ter) AND multiple conditions ClinVar Detail
NM_000051.4(ATM):c.1339C>T (p.Arg447Ter) AND multiple conditions ClinVar Detail
NM_000051.4(ATM):c.1339C>T (p.Arg447Ter) AND Gastric cancer ClinVar Detail
NM_000051.4(ATM):c.1339C>T (p.Arg447Ter) AND Familial cancer of breast ClinVar Detail
NA DisGeNET Detail
NA DisGeNET Detail

Overlapped Transcript Coordinates

Gene Transcript ID Exon Number Chromosome Start Stop Type Amino Mutation Transcript Position Links

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs587779815 dbSNP
Genome
hg38
Position
chr11:108,250,804-108,250,804
Variant Type
snv
Reference Allele
C
Alternative Allele
T
East Asian Chromosome Counts (ExAC)
8648
East Asian Allele Counts (ExAC)
0
East Asian Heterozygous Counts (ExAC)
0
East Asian Homozygous Counts (ExAC)
0
East Asian Allele Frequency (ExAC)
0.0
Chromosome Counts in All Race (ExAC)
121264
Allele Counts in All Race (ExAC)
1
Heterozygous Counts in All Race (ExAC)
1
Homozygous Counts in All Race (ExAC)
0
Allele Frequency in All Race (ExAC)
8.246470510621453E-6
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