chr10:87925512:G>A Detail (hg38) (PTEN)

Information

Genome

Assembly Position
hg19 chr10:89,685,269-89,685,269 View the variant detail on this assembly version.
hg38 chr10:87,925,512-87,925,512

HGVS

Type Transcript Protein
RefSeq NM_000314.6:c.165-1G>A
NM_001304717.2:c.165-1G>A
NM_001304718.1:c.165-1G>A
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance Likely pathogenic
Review star
Show details
Links
Type Database ID Link
Gene MIM 601728 OMIM
HGNC 9588 HGNC
Ensembl ENSG00000171862 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar
COSMIC
MONDO
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
Clinical significance Last evaluated Review status Condition Origin Links
Pathogenic 2022-03-08 criteria provided, single submitter Hereditary cancer-predisposing syndrome germline Detail
Pathogenic Likely pathogenic 2022-06-30 criteria provided, multiple submitters, no conflicts not provided germline Detail
Likely pathogenic 2024-04-05 reviewed by expert panel PTEN hamartoma tumor syndrome germline Detail
Pathogenic 2021-10-25 criteria provided, single submitter Cowden syndrome 1 germline Detail
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.122 Neoplastic Syndromes, Hereditary NA CLINVAR Detail
Annotation

Annotations

DescrptionSourceLinks
NM_000314.8(PTEN):c.165-1G>A AND Hereditary cancer-predisposing syndrome ClinVar Detail
NM_000314.8(PTEN):c.165-1G>A AND not provided ClinVar Detail
NM_000314.8(PTEN):c.165-1G>A AND PTEN hamartoma tumor syndrome ClinVar Detail
NM_000314.8(PTEN):c.165-1G>A AND Cowden syndrome 1 ClinVar Detail
NA DisGeNET Detail

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs786203847 dbSNP
Genome
hg38
Position
chr10:87,925,512-87,925,512
Variant Type
snv
Reference Allele
G
Alternative Allele
A
Genome browser