chr10:12286011:A>G Detail (hg38)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr10:12,328,010-12,328,010 View the variant detail on this assembly version. |
| hg38 | chr10:12,286,011-12,286,011 |
HGVS
[No Data.]
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.145 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| 0.005 | diabetes mellitus | Another diabetes susceptibility locus (rs12779790) located between the calcium/c... | BeFree | 24135527 | Detail |
| <0.001 | Diabetes | Another diabetes susceptibility locus (rs12779790) located between the calcium/c... | BeFree | 24135527 | Detail |
| 0.340 | Diabetes Mellitus, Non-Insulin-Dependent | Thus, we aimed to investigate the contribution of rs1111875 (HHEX), rs1800961 (H... | BeFree | 25839936 | Detail |
| 0.090 | Diabetes Mellitus, Non-Insulin-Dependent | Association to type 2 diabetes was found for rs13266634 (SLC30A8), rs7923837 (HH... | BeFree | 22923468 | Detail |
| 0.614 | Diabetes Mellitus, Non-Insulin-Dependent | Thus, we aimed to investigate the contribution of rs1111875 (HHEX), rs1800961 (H... | BeFree | 25839936 | Detail |
| 0.466 | Diabetes Mellitus, Non-Insulin-Dependent | Thus, we aimed to investigate the contribution of rs1111875 (HHEX), rs1800961 (H... | BeFree | 25839936 | Detail |
| 0.055 | Diabetes Mellitus, Non-Insulin-Dependent | Thus, we aimed to investigate the contribution of rs1111875 (HHEX), rs1800961 (H... | BeFree | 25839936 | Detail |
| 0.042 | Diabetes Mellitus, Non-Insulin-Dependent | Association to type 2 diabetes was found for rs13266634 (SLC30A8), rs7923837 (HH... | BeFree | 22923468 | Detail |
| 0.042 | Diabetes Mellitus, Non-Insulin-Dependent | Thus, we aimed to investigate the contribution of rs1111875 (HHEX), rs1800961 (H... | BeFree | 25839936 | Detail |
| 0.336 | Diabetes Mellitus, Non-Insulin-Dependent | Association to type 2 diabetes was found for rs13266634 (SLC30A8), rs7923837 (HH... | BeFree | 22923468 | Detail |
| 0.121 | Diabetes Mellitus, Non-Insulin-Dependent | Thus, we aimed to investigate the contribution of rs1111875 (HHEX), rs1800961 (H... | BeFree | 25839936 | Detail |
| 0.090 | Diabetes Mellitus, Non-Insulin-Dependent | Thus, we aimed to investigate the contribution of rs1111875 (HHEX), rs1800961 (H... | BeFree | 25839936 | Detail |
| 0.025 | Diabetes Mellitus, Non-Insulin-Dependent | Thus, we aimed to investigate the contribution of rs1111875 (HHEX), rs1800961 (H... | BeFree | 25839936 | Detail |
| 0.340 | Diabetes Mellitus, Non-Insulin-Dependent | Association to type 2 diabetes was found for rs13266634 (SLC30A8), rs7923837 (HH... | BeFree | 22923468 | Detail |
| 0.452 | Diabetes Mellitus, Non-Insulin-Dependent | Association to type 2 diabetes was found for rs13266634 (SLC30A8), rs7923837 (HH... | BeFree | 22923468 | Detail |
| 0.006 | diabetes mellitus | We evaluated the impact on diabetes-related intermediary traits of common novel ... | BeFree | 18567820 | Detail |
| 0.005 | diabetes mellitus | We evaluated the impact on diabetes-related intermediary traits of common novel ... | BeFree | 18567820 | Detail |
| <0.001 | Diabetes | We evaluated the impact on diabetes-related intermediary traits of common novel ... | BeFree | 18567820 | Detail |
| 0.293 | Diabetes Mellitus, Non-Insulin-Dependent | We evaluated the impact on diabetes-related intermediary traits of common novel ... | BeFree | 18567820 | Detail |
| 0.001 | Diabetes | We evaluated the impact on diabetes-related intermediary traits of common novel ... | BeFree | 18567820 | Detail |
| <0.001 | Diabetes | We evaluated the impact on diabetes-related intermediary traits of common novel ... | BeFree | 18567820 | Detail |
| 0.008 | diabetes mellitus | We evaluated the impact on diabetes-related intermediary traits of common novel ... | BeFree | 18567820 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| Another diabetes susceptibility locus (rs12779790) located between the calcium/calmodulin-dependent ... | DisGeNET | Detail |
| Another diabetes susceptibility locus (rs12779790) located between the calcium/calmodulin-dependent ... | DisGeNET | Detail |
| Thus, we aimed to investigate the contribution of rs1111875 (HHEX), rs1800961 (HNF4α), rs5219 (KCNJ1... | DisGeNET | Detail |
| Association to type 2 diabetes was found for rs13266634 (SLC30A8), rs7923837 (HHEX), rs10811661 (CDK... | DisGeNET | Detail |
| Thus, we aimed to investigate the contribution of rs1111875 (HHEX), rs1800961 (HNF4α), rs5219 (KCNJ1... | DisGeNET | Detail |
| Thus, we aimed to investigate the contribution of rs1111875 (HHEX), rs1800961 (HNF4α), rs5219 (KCNJ1... | DisGeNET | Detail |
| Thus, we aimed to investigate the contribution of rs1111875 (HHEX), rs1800961 (HNF4α), rs5219 (KCNJ1... | DisGeNET | Detail |
| Association to type 2 diabetes was found for rs13266634 (SLC30A8), rs7923837 (HHEX), rs10811661 (CDK... | DisGeNET | Detail |
| Thus, we aimed to investigate the contribution of rs1111875 (HHEX), rs1800961 (HNF4α), rs5219 (KCNJ1... | DisGeNET | Detail |
| Association to type 2 diabetes was found for rs13266634 (SLC30A8), rs7923837 (HHEX), rs10811661 (CDK... | DisGeNET | Detail |
| Thus, we aimed to investigate the contribution of rs1111875 (HHEX), rs1800961 (HNF4α), rs5219 (KCNJ1... | DisGeNET | Detail |
| Thus, we aimed to investigate the contribution of rs1111875 (HHEX), rs1800961 (HNF4α), rs5219 (KCNJ1... | DisGeNET | Detail |
| Thus, we aimed to investigate the contribution of rs1111875 (HHEX), rs1800961 (HNF4α), rs5219 (KCNJ1... | DisGeNET | Detail |
| Association to type 2 diabetes was found for rs13266634 (SLC30A8), rs7923837 (HHEX), rs10811661 (CDK... | DisGeNET | Detail |
| Association to type 2 diabetes was found for rs13266634 (SLC30A8), rs7923837 (HHEX), rs10811661 (CDK... | DisGeNET | Detail |
| We evaluated the impact on diabetes-related intermediary traits of common novel type 2 diabetes-asso... | DisGeNET | Detail |
| We evaluated the impact on diabetes-related intermediary traits of common novel type 2 diabetes-asso... | DisGeNET | Detail |
| We evaluated the impact on diabetes-related intermediary traits of common novel type 2 diabetes-asso... | DisGeNET | Detail |
| We evaluated the impact on diabetes-related intermediary traits of common novel type 2 diabetes-asso... | DisGeNET | Detail |
| We evaluated the impact on diabetes-related intermediary traits of common novel type 2 diabetes-asso... | DisGeNET | Detail |
| We evaluated the impact on diabetes-related intermediary traits of common novel type 2 diabetes-asso... | DisGeNET | Detail |
| We evaluated the impact on diabetes-related intermediary traits of common novel type 2 diabetes-asso... | DisGeNET | Detail |
- Gene
- -
- dbSNP
- rs12779790 dbSNP
- Genome
- hg38
- Position
- chr10:12,286,011-12,286,011
- Variant Type
- snv
- Reference Allele
- A
- Alternative Allele
- G
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs12779790
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.1454
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 2437
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
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