chr1:173857592:C>T Detail (hg38) (DARS2)

Information

Genome

Assembly Position
hg19 chr1:173,826,730-173,826,730 View the variant detail on this assembly version.
hg38 chr1:173,857,592-173,857,592

HGVS

Type Transcript Protein
RefSeq
Ensemble ENST00000647645.1:c.1762C>T ENST00000647645.1:p.Arg588Trp
ENST00000648807.1:c.1672C>T ENST00000648807.1:p.Arg558Trp
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:[No Data.]
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:<0.001

Prediction

ClinVar

Clinical Significance Uncertain significance
Review star
Show details
Links
Type Database ID Link
Gene MIM 610956 OMIM
HGNC 25538 HGNC
Ensembl ENSG00000117593 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar tgv302698368 TogoVar
COSMIC
MONDO
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
Clinical significance Last evaluated Review status Condition Origin Links
Uncertain significance 2023-04-11 criteria provided, multiple submitters, no conflicts Leukoencephalopathy with brain stem and spinal cord involvement-high lactate syndrome germline Detail
Uncertain significance 2024-02-01 criteria provided, multiple submitters, no conflicts not provided germline Detail
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.481 Leukoencephalopathy with Brainstem and Spinal Cord Involvement and Lactate Elevation NA CLINVAR Detail
Annotation

Annotations

DescrptionSourceLinks
NM_018122.5(DARS2):c.1825C>T (p.Arg609Trp) AND Leukoencephalopathy with brain stem and spinal cord i... ClinVar Detail
NM_018122.5(DARS2):c.1825C>T (p.Arg609Trp) AND not provided ClinVar Detail
NA DisGeNET Detail

Overlapped Transcript Coordinates

Gene Transcript ID Exon Number Chromosome Start Stop Type Amino Mutation Transcript Position Links

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs200670286 dbSNP
Genome
hg38
Position
chr1:173,857,592-173,857,592
Variant Type
snv
Reference Allele
C
Alternative Allele
T
East Asian Chromosome Counts (ExAC)
8650
East Asian Allele Counts (ExAC)
0
East Asian Heterozygous Counts (ExAC)
0
East Asian Homozygous Counts (ExAC)
0
East Asian Allele Frequency (ExAC)
0.0
Chromosome Counts in All Race (ExAC)
121354
Allele Counts in All Race (ExAC)
1
Heterozygous Counts in All Race (ExAC)
1
Homozygous Counts in All Race (ExAC)
0
Allele Frequency in All Race (ExAC)
8.240354664864776E-6
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