chr1:159715306:C>T Detail (hg38)

Information

Genome

Assembly Position
hg19 chr1:159,685,096-159,685,096 View the variant detail on this assembly version.
hg38 chr1:159,715,306-159,715,306

HGVS

[No Data.]
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:0.903
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
<0.001 Fatigue The associations between fatigue and SNPs in inflammation-related genes; IL1β (r... BeFree 21496483 Detail
0.002 Cerebrovascular accident Risk factors of stroke and -717A&gt;G (rs2794521) CRP gene polymorphism among st... BeFree 24636767 Detail
Annotation

Annotations

DescrptionSourceLinks
The associations between fatigue and SNPs in inflammation-related genes; IL1β (rs16944), IL6 (rs1800... DisGeNET Detail
Risk factors of stroke and -717A&gt;G (rs2794521) CRP gene polymorphism among stroke patients in Wes... DisGeNET Detail
Gene
-
dbSNP
rs2794521 dbSNP
Genome
hg38
Position
chr1:159,715,306-159,715,306
Variant Type
snv
Reference Allele
C
Alternative Allele
T
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs2794521
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.9026
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
15127
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16760
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