chr6:34302869:A>G Detail (hg19) (NUDT3, RPS10-NUDT3)
Information
Genome
Assembly | Position |
---|---|
hg19 | chr6:34,302,869-34,302,869 |
hg38 | chr6:34,335,092-34,335,092 View the variant detail on this assembly version. |
HGVS
Type | Transcript | Protein |
---|---|---|
RefSeq | NM_006703.3:c.210+6770T>C | |
Ensemble | ENST00000607016.2:c.210+6770T>C |
Type | Transcript | Protein |
---|---|---|
RefSeq | NM_001202470.2:c.567+6770T>C | |
Ensemble | ENST00000639725.1:c.567+6770T>C | |
ENST00000639877.1:c.567+6770T>C |
Summary
MGeND
Clinical significance | |
Variant entry | |
GWAS entry | |
Disease area statistics | Show details |
Frequency
JP | HGVD:[No Data.] |
ToMMo:0.573 | |
NCBN:[No Data.] | |
NCBN(Hondo):[No Data.] | |
NCBN(Ryukyu):[No Data.] | |
East asia | ExAC:[No Data.] |
Prediction
ClinVar
Clinical Significance | |
Review star | [No Data.] |
Show details |
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score | Disease name | Description | Source | Pubmed | Links |
---|---|---|---|---|---|
<0.001 | attention deficit hyperactivity disorder | In the German sample rs206936 in the NUDT3 gene (nudix; nucleoside diphosphate l... | BeFree | 23533005 | Detail |
<0.001 | obesity | NUDT3 rs206936 is associated with body mass index in obese Japanese women. | BeFree | 23708086 | Detail |
<0.001 | Inattention | In the German sample rs206936 (NUDT3) and rs10938397 in the glucosamine-6-phosph... | BeFree | 23533005 | Detail |
<0.001 | Inattention | In the German sample rs206936 (NUDT3) and rs10938397 in the glucosamine-6-phosph... | BeFree | 23533005 | Detail |
0.014 | obesity | Eight loci, rs10968576 (BDNF), rs3817334 (MTCH2), rs1558902 (FTO), rs571312 (MC4... | BeFree | 22041983 | Detail |
<0.001 | obesity | Eight loci, rs10968576 (BDNF), rs3817334 (MTCH2), rs1558902 (FTO), rs571312 (MC4... | BeFree | 22041983 | Detail |
0.121 | obesity | Eight loci, rs10968576 (BDNF), rs3817334 (MTCH2), rs1558902 (FTO), rs571312 (MC4... | BeFree | 22041983 | Detail |
0.150 | obesity | Eight loci, rs10968576 (BDNF), rs3817334 (MTCH2), rs1558902 (FTO), rs571312 (MC4... | BeFree | 22041983 | Detail |
0.162 | obesity | Eight loci, rs10968576 (BDNF), rs3817334 (MTCH2), rs1558902 (FTO), rs571312 (MC4... | BeFree | 22041983 | Detail |
0.021 | obesity | Eight loci, rs10968576 (BDNF), rs3817334 (MTCH2), rs1558902 (FTO), rs571312 (MC4... | BeFree | 22041983 | Detail |
0.791 | obesity | Eight loci, rs10968576 (BDNF), rs3817334 (MTCH2), rs1558902 (FTO), rs571312 (MC4... | BeFree | 22041983 | Detail |
0.126 | obesity | Eight loci, rs10968576 (BDNF), rs3817334 (MTCH2), rs1558902 (FTO), rs571312 (MC4... | BeFree | 22041983 | Detail |
<0.001 | obesity | Eight loci, rs10968576 (BDNF), rs3817334 (MTCH2), rs1558902 (FTO), rs571312 (MC4... | BeFree | 22041983 | Detail |
Annotation
Annotations
Descrption | Source | Links |
---|---|---|
In the German sample rs206936 in the NUDT3 gene (nudix; nucleoside diphosphate linked moiety X-type ... | DisGeNET | Detail |
NUDT3 rs206936 is associated with body mass index in obese Japanese women. | DisGeNET | Detail |
In the German sample rs206936 (NUDT3) and rs10938397 in the glucosamine-6-phosphate deaminase 2 gene... | DisGeNET | Detail |
In the German sample rs206936 (NUDT3) and rs10938397 in the glucosamine-6-phosphate deaminase 2 gene... | DisGeNET | Detail |
Eight loci, rs10968576 (BDNF), rs3817334 (MTCH2), rs1558902 (FTO), rs571312 (MC4R), rs543874 (SEC16B... | DisGeNET | Detail |
Eight loci, rs10968576 (BDNF), rs3817334 (MTCH2), rs1558902 (FTO), rs571312 (MC4R), rs543874 (SEC16B... | DisGeNET | Detail |
Eight loci, rs10968576 (BDNF), rs3817334 (MTCH2), rs1558902 (FTO), rs571312 (MC4R), rs543874 (SEC16B... | DisGeNET | Detail |
Eight loci, rs10968576 (BDNF), rs3817334 (MTCH2), rs1558902 (FTO), rs571312 (MC4R), rs543874 (SEC16B... | DisGeNET | Detail |
Eight loci, rs10968576 (BDNF), rs3817334 (MTCH2), rs1558902 (FTO), rs571312 (MC4R), rs543874 (SEC16B... | DisGeNET | Detail |
Eight loci, rs10968576 (BDNF), rs3817334 (MTCH2), rs1558902 (FTO), rs571312 (MC4R), rs543874 (SEC16B... | DisGeNET | Detail |
Eight loci, rs10968576 (BDNF), rs3817334 (MTCH2), rs1558902 (FTO), rs571312 (MC4R), rs543874 (SEC16B... | DisGeNET | Detail |
Eight loci, rs10968576 (BDNF), rs3817334 (MTCH2), rs1558902 (FTO), rs571312 (MC4R), rs543874 (SEC16B... | DisGeNET | Detail |
Eight loci, rs10968576 (BDNF), rs3817334 (MTCH2), rs1558902 (FTO), rs571312 (MC4R), rs543874 (SEC16B... | DisGeNET | Detail |
Overlapped Transcript
Gene | Transcript ID | Chromosome | Start | Stop | Links |
---|
- Gene
- -
- dbSNP
- rs206936 dbSNP
- Genome
- hg19
- Position
- chr6:34,302,869-34,302,869
- Variant Type
- snv
- Reference Allele
- A
- Alternative Allele
- G
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs206936
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.5726
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 9596
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
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