chr6:161609016:T>C Detail (hg19) (AGPAT4)

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Information

Genome

Assembly	Position
hg19	chr6:161,609,016-161,609,016
hg38	chr6:161,187,984-161,187,984 View the variant detail on this assembly version.

Summary

Links

Type	Database	ID	Link
Gene	MIM	614795	OMIM
	HGNC	20885	HGNC
	Ensembl	ENSG00000026652	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar	tgv27728001	TogoVar
	COSMIC
	MONDO

Disease area statistics

[No Data.]

MGeND

[No Data.]

ClinVar

[No Data.]

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.080	post-traumatic stress disorder	Using q-value analysis for multiplicity correction, we found significant interac...	BeFree	17570738	Detail
<0.001	post-traumatic stress disorder	Using q-value analysis for multiplicity correction, we found significant interac...	BeFree	17570738	Detail

Annotation

Descrption	Source	Links
Using q-value analysis for multiplicity correction, we found significant interactions between lithiu...	DisGeNET	Detail
Using q-value analysis for multiplicity correction, we found significant interactions between lithiu...	DisGeNET	Detail

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs2064721 dbSNP
Genome: hg19
Position: chr6:161,609,016-161,609,016
Variant Type: snv
Reference Allele: T
Alternative Allele: C
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831)): PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831)): rs2064721
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831)): 0.2594
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831)): 4347
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831)): 16760

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