chr5:160756625:A>G Detail (hg19) (GABRB2)
Information
Genome
Assembly | Position |
---|---|
hg19 | chr5:160,756,625-160,756,625 |
hg38 | chr5:161,329,618-161,329,618 View the variant detail on this assembly version. |
HGVS
Type | Transcript | Protein |
---|---|---|
RefSeq | NM_000813.2:c.1077+1265T>C | |
NM_021911.2:c.1077+1265T>C | ||
Ensemble | ENST00000274547.7:c.1077+1265T>C |
Summary
MGeND
Clinical significance | |
Variant entry | |
GWAS entry | |
Disease area statistics | Show details |
Frequency
JP | HGVD:[No Data.] |
ToMMo:0.176 | |
NCBN:[No Data.] | |
NCBN(Hondo):[No Data.] | |
NCBN(Ryukyu):[No Data.] | |
East asia | ExAC:[No Data.] |
Prediction
ClinVar
Clinical Significance | |
Review star | [No Data.] |
Show details |
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score | Disease name | Description | Source | Pubmed | Links |
---|---|---|---|---|---|
0.152 | schizophrenia | Five SNPs in GABRB2, namely B2I7G1584T, rs1816071, rs194072, rs252944 and rs1872... | BeFree | 14699426 | Detail |
0.152 | schizophrenia | Using the multifactor-dimensionality reduction method (MDR), we found that the i... | BeFree | 17412563 | Detail |
0.134 | schizophrenia | Using the multifactor-dimensionality reduction method (MDR), we found that the i... | BeFree | 17412563 | Detail |
Annotation
Annotations
Descrption | Source | Links |
---|---|---|
Five SNPs in GABRB2, namely B2I7G1584T, rs1816071, rs194072, rs252944 and rs187269, were found to be... | DisGeNET | Detail |
Using the multifactor-dimensionality reduction method (MDR), we found that the interactions among th... | DisGeNET | Detail |
Using the multifactor-dimensionality reduction method (MDR), we found that the interactions among th... | DisGeNET | Detail |
Overlapped Transcript
Gene | Transcript ID | Chromosome | Start | Stop | Links |
---|
- Gene
- -
- dbSNP
- rs187269 dbSNP
- Genome
- hg19
- Position
- chr5:160,756,625-160,756,625
- Variant Type
- snv
- Reference Allele
- A
- Alternative Allele
- G
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs187269
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.176
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 2949
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
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