chr3:33109737:G>A Detail (hg19) (GLB1)

Information

Genome

Assembly Position
hg19 chr3:33,109,737-33,109,737
hg38 chr3:33,068,245-33,068,245 View the variant detail on this assembly version.

HGVS

Type Transcript Protein
RefSeq NM_000404.3:c.442C>T NP_000395.2:p.Arg148Cys
NM_001317040.1:c.442C>T NP_001303969.1:p.Arg148Cys
NM_001135602.2:c.246-2688C>T
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:[No Data.]
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:<0.001

Prediction

ClinVar

Clinical Significance Pathogenic Likely pathogenic
Review star
Show details
Links
Type Database ID Link
Gene MIM 611458 OMIM
HGNC 4298 HGNC
Ensembl ENSG00000170266 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar
COSMIC COSM6671350 COSMIC
MONDO
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
Clinical significance Last evaluated Review status Condition Origin Links
Pathogenic 2013-07-08 criteria provided, single submitter not provided germline Detail
Pathogenic Likely pathogenic 2022-02-23 criteria provided, multiple submitters, no conflicts GM1 gangliosidosis type 2,GM1 gangliosidosis type 3,Infantile GM1 gangliosidosis,Mucopolysaccharidosis, MPS-IV-B unknown Detail
Pathogenic Likely pathogenic 2022-02-23 criteria provided, multiple submitters, no conflicts GM1 gangliosidosis type 2,GM1 gangliosidosis type 3,Infantile GM1 gangliosidosis,Mucopolysaccharidosis, MPS-IV-B unknown Detail
Pathogenic Likely pathogenic 2022-02-23 criteria provided, multiple submitters, no conflicts GM1 gangliosidosis type 2,GM1 gangliosidosis type 3,Infantile GM1 gangliosidosis,Mucopolysaccharidosis, MPS-IV-B unknown Detail
Pathogenic Likely pathogenic 2022-02-23 criteria provided, multiple submitters, no conflicts GM1 gangliosidosis type 2,GM1 gangliosidosis type 3,Infantile GM1 gangliosidosis,Mucopolysaccharidosis, MPS-IV-B unknown Detail
Pathogenic 2024-01-29 criteria provided, multiple submitters, no conflicts GM1 gangliosidosis germline Detail
Pathogenic 2024-01-13 criteria provided, single submitter Mucopolysaccharidosis, MPS-IV-B,GM1 gangliosidosis germline Detail
Pathogenic 2024-01-13 criteria provided, single submitter Mucopolysaccharidosis, MPS-IV-B,GM1 gangliosidosis germline Detail
Pathogenic Likely pathogenic 2020-07-09 criteria provided, multiple submitters, no conflicts Infantile GM1 gangliosidosis germline unknown Detail
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.367 mucopolysaccharidosis type IVB NA CLINVAR Detail
0.362 Gangliosidosis, Generalized GM1, Type 1 (disorder) NA CLINVAR Detail
0.441 Gangliosidosis, Generalized GM1, Type 2 NA CLINVAR Detail
0.361 Gangliosidosis, Generalized GM1, Type 3 NA CLINVAR Detail
0.362 Gangliosidosis, Generalized GM1, Type 1 (disorder) A patient with infantile GM1 gangliosidosis carried a complex GLB1 allele harbou... BeFree 21497194 Detail
Annotation

Annotations

DescrptionSourceLinks
NM_000404.4(GLB1):c.442C>T (p.Arg148Cys) AND not provided ClinVar Detail
NM_000404.4(GLB1):c.442C>T (p.Arg148Cys) AND multiple conditions ClinVar Detail
NM_000404.4(GLB1):c.442C>T (p.Arg148Cys) AND multiple conditions ClinVar Detail
NM_000404.4(GLB1):c.442C>T (p.Arg148Cys) AND multiple conditions ClinVar Detail
NM_000404.4(GLB1):c.442C>T (p.Arg148Cys) AND multiple conditions ClinVar Detail
NM_000404.4(GLB1):c.442C>T (p.Arg148Cys) AND GM1 gangliosidosis ClinVar Detail
NM_000404.4(GLB1):c.442C>T (p.Arg148Cys) AND multiple conditions ClinVar Detail
NM_000404.4(GLB1):c.442C>T (p.Arg148Cys) AND multiple conditions ClinVar Detail
NM_000404.4(GLB1):c.442C>T (p.Arg148Cys) AND Infantile GM1 gangliosidosis ClinVar Detail
NA DisGeNET Detail
NA DisGeNET Detail
NA DisGeNET Detail
NA DisGeNET Detail
A patient with infantile GM1 gangliosidosis carried a complex GLB1 allele harbouring two genetic var... DisGeNET Detail

Overlapped Transcript Coordinates

Gene Transcript ID Exon Number Chromosome Start Stop Type Amino Mutation Transcript Position Links

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs192732174 dbSNP
Genome
hg19
Position
chr3:33,109,737-33,109,737
Variant Type
snv
Reference Allele
G
Alternative Allele
A
East Asian Chromosome Counts (ExAC)
8606
East Asian Allele Counts (ExAC)
0
East Asian Heterozygous Counts (ExAC)
0
East Asian Homozygous Counts (ExAC)
0
East Asian Allele Frequency (ExAC)
0.0
Chromosome Counts in All Race (ExAC)
120262
Allele Counts in All Race (ExAC)
2
Heterozygous Counts in All Race (ExAC)
2
Homozygous Counts in All Race (ExAC)
0
Allele Frequency in All Race (ExAC)
1.6630357053765943E-5
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