chr2:644953:A>G Detail (hg19)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr2:644,953-644,953 |
| hg38 | chr2:644,953-644,953 View the variant detail on this assembly version. |
HGVS
[No Data.]
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.904 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| 0.162 | obesity | The SNP rs10913469 in SEC16B (P=0.000012) and four SNPs (rs2867125, rs6548238, r... | BeFree | 19851340 | Detail |
| 0.011 | Diabetes Mellitus, Non-Insulin-Dependent | In the meta-analysis of 42 studies for 11 obesity/BMI-associated loci, we observ... | BeFree | 24528214 | Detail |
| 0.341 | Diabetes Mellitus, Non-Insulin-Dependent | In the meta-analysis of 42 studies for 11 obesity/BMI-associated loci, we observ... | BeFree | 24528214 | Detail |
| 0.155 | obesity | In the meta-analysis of 42 studies for 11 obesity/BMI-associated loci, we observ... | BeFree | 24528214 | Detail |
| 0.007 | Diabetes Mellitus, Non-Insulin-Dependent | In the meta-analysis of 42 studies for 11 obesity/BMI-associated loci, we observ... | BeFree | 24528214 | Detail |
| 0.278 | obesity | In the meta-analysis of 42 studies for 11 obesity/BMI-associated loci, we observ... | BeFree | 24528214 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| The SNP rs10913469 in SEC16B (P=0.000012) and four SNPs (rs2867125, rs6548238, rs4854344 and rs75613... | DisGeNET | Detail |
| In the meta-analysis of 42 studies for 11 obesity/BMI-associated loci, we observed a statistically s... | DisGeNET | Detail |
| In the meta-analysis of 42 studies for 11 obesity/BMI-associated loci, we observed a statistically s... | DisGeNET | Detail |
| In the meta-analysis of 42 studies for 11 obesity/BMI-associated loci, we observed a statistically s... | DisGeNET | Detail |
| In the meta-analysis of 42 studies for 11 obesity/BMI-associated loci, we observed a statistically s... | DisGeNET | Detail |
| In the meta-analysis of 42 studies for 11 obesity/BMI-associated loci, we observed a statistically s... | DisGeNET | Detail |
- Gene
- -
- dbSNP
- rs7561317 dbSNP
- Genome
- hg19
- Position
- chr2:644,953-644,953
- Variant Type
- snv
- Reference Allele
- A
- Alternative Allele
- G
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs7561317
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.9044
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 15157
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
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