chr2:208390388:T>C Detail (hg19)

Information

Genome

Assembly Position
hg19 chr2:208,390,388-208,390,388
hg38 chr2:207,525,664-207,525,664 View the variant detail on this assembly version.

HGVS

[No Data.]
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:1.000
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.012 Mental Depression One hundred-ninety MD patients collected in the context of a resistant depressio... BeFree 20643483 Detail
0.004 depressive disorder One hundred-ninety MD patients collected in the context of a resistant depressio... BeFree 20643483 Detail
Annotation

Annotations

DescrptionSourceLinks
One hundred-ninety MD patients collected in the context of a resistant depression study and treated ... DisGeNET Detail
One hundred-ninety MD patients collected in the context of a resistant depression study and treated ... DisGeNET Detail
Gene
-
dbSNP
rs2709376 dbSNP
Genome
hg19
Position
chr2:208,390,388-208,390,388
Variant Type
snv
Reference Allele
T
Alternative Allele
C
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs2709376
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
1
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16760
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16760
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