chr14:104179267:T>C Detail (hg19) (KLC1, XRCC3)

Information

Genome

Assembly Position
hg19 chr14:104,179,267-104,179,267
hg38 chr14:103,712,930-103,712,930 View the variant detail on this assembly version.

HGVS

Type Transcript Protein
RefSeq
Ensemble ENST00000348520.10:c.*11731T>C
Type Transcript Protein
RefSeq NM_001100118.1:c.-260-1363A>G
NM_001100119.1:c.-316A>G
NM_005432.3:c.-316A>G
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:0.470
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Type Database ID Link
Gene MIM 600025 OMIM
HGNC 6387 HGNC
Ensembl ENSG00000126214 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar tgv52046918 TogoVar
COSMIC
MONDO
Type Database ID Link
Gene MIM 600675 OMIM
HGNC 12830 HGNC
Ensembl ENSG00000126215 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar tgv52046918 TogoVar
COSMIC
MONDO
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.042 breast carcinoma We aimed to determine the associations of genetic polymorphisms of excision repa... BeFree 24933103 Detail
0.005 Non-small cell lung carcinoma We aimed to determine the associations of genetic polymorphisms of excision repa... BeFree 24933103 Detail
0.012 Non-small cell lung carcinoma We aimed to determine the associations of genetic polymorphisms of excision repa... BeFree 24933103 Detail
0.002 Xeroderma Pigmentosum, Complementation Group D We aimed to determine the associations of genetic polymorphisms of excision repa... BeFree 24933103 Detail
0.098 Malignant neoplasm of breast We aimed to determine the associations of genetic polymorphisms of excision repa... BeFree 24933103 Detail
0.080 breast carcinoma We aimed to determine the associations of genetic polymorphisms of excision repa... BeFree 24933103 Detail
0.018 Malignant neoplasm of breast We aimed to determine the associations of genetic polymorphisms of excision repa... BeFree 24933103 Detail
0.005 Non-small cell lung carcinoma We aimed to determine the associations of genetic polymorphisms of excision repa... BeFree 24933103 Detail
0.084 Malignant neoplasm of breast We aimed to determine the associations of genetic polymorphisms of excision repa... BeFree 24933103 Detail
0.018 breast carcinoma We aimed to determine the associations of genetic polymorphisms of excision repa... BeFree 24933103 Detail
0.011 breast carcinoma We aimed to determine the associations of genetic polymorphisms of excision repa... BeFree 24933103 Detail
0.360 Malignant neoplasm of breast We aimed to determine the associations of genetic polymorphisms of excision repa... BeFree 24933103 Detail
0.097 Malignant neoplasm of breast We aimed to determine the associations of genetic polymorphisms of excision repa... BeFree 24933103 Detail
0.085 Malignant neoplasm of breast We aimed to determine the associations of genetic polymorphisms of excision repa... BeFree 24933103 Detail
0.008 breast carcinoma We aimed to determine the associations of genetic polymorphisms of excision repa... BeFree 24933103 Detail
0.006 breast carcinoma We aimed to determine the associations of genetic polymorphisms of excision repa... BeFree 24933103 Detail
0.003 stomach carcinoma In R0 resected patients, XRCC3 variants (rs861539, P = 0.04; rs861530, P = 0.02)... BeFree 21347786 Detail
0.003 Malignant neoplasm of esophagus In R0 resected patients, XRCC3 variants (rs861539, P = 0.04; rs861530, P = 0.02)... BeFree 21347786 Detail
0.007 Malignant neoplasm of stomach In R0 resected patients, XRCC3 variants (rs861539, P = 0.04; rs861530, P = 0.02)... BeFree 21347786 Detail
0.127 Esophageal Neoplasms In R0 resected patients, XRCC3 variants (rs861539, P = 0.04; rs861530, P = 0.02)... BeFree 21347786 Detail
<0.001 esophageal carcinoma In R0 resected patients, XRCC3 variants (rs861539, P = 0.04; rs861530, P = 0.02)... BeFree 21347786 Detail
Annotation

Annotations

DescrptionSourceLinks
We aimed to determine the associations of genetic polymorphisms of excision repair cross-complementa... DisGeNET Detail
We aimed to determine the associations of genetic polymorphisms of excision repair cross-complementa... DisGeNET Detail
We aimed to determine the associations of genetic polymorphisms of excision repair cross-complementa... DisGeNET Detail
We aimed to determine the associations of genetic polymorphisms of excision repair cross-complementa... DisGeNET Detail
We aimed to determine the associations of genetic polymorphisms of excision repair cross-complementa... DisGeNET Detail
We aimed to determine the associations of genetic polymorphisms of excision repair cross-complementa... DisGeNET Detail
We aimed to determine the associations of genetic polymorphisms of excision repair cross-complementa... DisGeNET Detail
We aimed to determine the associations of genetic polymorphisms of excision repair cross-complementa... DisGeNET Detail
We aimed to determine the associations of genetic polymorphisms of excision repair cross-complementa... DisGeNET Detail
We aimed to determine the associations of genetic polymorphisms of excision repair cross-complementa... DisGeNET Detail
We aimed to determine the associations of genetic polymorphisms of excision repair cross-complementa... DisGeNET Detail
We aimed to determine the associations of genetic polymorphisms of excision repair cross-complementa... DisGeNET Detail
We aimed to determine the associations of genetic polymorphisms of excision repair cross-complementa... DisGeNET Detail
We aimed to determine the associations of genetic polymorphisms of excision repair cross-complementa... DisGeNET Detail
We aimed to determine the associations of genetic polymorphisms of excision repair cross-complementa... DisGeNET Detail
We aimed to determine the associations of genetic polymorphisms of excision repair cross-complementa... DisGeNET Detail
In R0 resected patients, XRCC3 variants (rs861539, P = 0.04; rs861530, P = 0.02) in esophageal cance... DisGeNET Detail
In R0 resected patients, XRCC3 variants (rs861539, P = 0.04; rs861530, P = 0.02) in esophageal cance... DisGeNET Detail
In R0 resected patients, XRCC3 variants (rs861539, P = 0.04; rs861530, P = 0.02) in esophageal cance... DisGeNET Detail
In R0 resected patients, XRCC3 variants (rs861539, P = 0.04; rs861530, P = 0.02) in esophageal cance... DisGeNET Detail
In R0 resected patients, XRCC3 variants (rs861539, P = 0.04; rs861530, P = 0.02) in esophageal cance... DisGeNET Detail

Overlapped Transcript Coordinates

Gene Transcript ID Exon Number Chromosome Start Stop Type Amino Mutation Transcript Position Links

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs1799794 dbSNP
Genome
hg19
Position
chr14:104,179,267-104,179,267
Variant Type
snv
Reference Allele
T
Alternative Allele
C
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs1799794
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.47
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
7877
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16760
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