chr11:2790112:G>A Detail (hg19) (KCNQ1)

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Summary
Information
Links
Disease area statistics
MGeND
ClinVar
CIViC
DisGeNET
Annotation
Genome browser

Information

Genome

Assembly	Position
hg19	chr11:2,790,112-2,790,112
hg38	chr11:2,768,882-2,768,882 View the variant detail on this assembly version.

HGVS

KCNQ1

Type	Transcript	Protein
RefSeq	NM_181798.1:c.1172G>A	NP_861463.1:p.Arg391Gln
	NM_000218.2:c.1553G>A	NP_000209.2:p.Arg518Gln
Ensemble	ENST00000713725.1:c.1412G>A	ENST00000713725.1:p.Arg471Gln
	ENST00000646564.2:c.1013G>A	ENST00000646564.2:p.Arg338Gln
	ENST00000335475.6:c.1172G>A	ENST00000335475.6:p.Arg391Gln
	ENST00000496887.7:c.1196G>A	ENST00000496887.7:p.Arg399Gln
	ENST00000155840.12:c.1553G>A	ENST00000155840.12:p.Arg518Gln

Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics	Show details

Frequency

JP	HGVD:[No Data.]
	ToMMo:[No Data.]
	NCBN:[No Data.]
	NCBN(Hondo):[No Data.]
	NCBN(Ryukyu):[No Data.]
East asia	ExAC:<0.001

Prediction

ClinVar

Clinical Significance	Uncertain significance
Review star
Show details

Links

KCNQ1

Type	Database	ID	Link
Gene	MIM	607542	OMIM
	HGNC	6294	HGNC
	Ensembl	ENSG00000053918	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar
	COSMIC
	MONDO

Disease area statistics

[No Data.]

MGeND

[No Data.]

ClinVar

Clinical significance	Last evaluated	Review status	Condition	Origin	Links
not provided		no assertion provided	Congenital long QT syndrome	germline	Detail
Uncertain significance	2024-01-29	criteria provided, multiple submitters, no conflicts	long QT syndrome	germline	Detail
Uncertain significance	2022-01-03	criteria provided, single submitter	not provided	germline	Detail
Uncertain significance	2022-01-24	criteria provided, single submitter	not specified	germline	Detail
Uncertain significance	2023-12-06	criteria provided, single submitter	Cardiac arrhythmia	germline	Detail
Uncertain significance	2021-09-01	criteria provided, single submitter	Atrial fibrillation, familial, 3,Beckwith-Wiedemann syndrome,Jervell and Lange-Nielsen syndrome 1,long QT syndrome 1,Short QT syndrome type 2	unknown	Detail
Uncertain significance	2021-09-01	criteria provided, single submitter	Atrial fibrillation, familial, 3,Beckwith-Wiedemann syndrome,Jervell and Lange-Nielsen syndrome 1,long QT syndrome 1,Short QT syndrome type 2	unknown	Detail
Uncertain significance	2021-09-01	criteria provided, single submitter	Atrial fibrillation, familial, 3,Beckwith-Wiedemann syndrome,Jervell and Lange-Nielsen syndrome 1,long QT syndrome 1,Short QT syndrome type 2	unknown	Detail
Uncertain significance	2021-09-01	criteria provided, single submitter	Atrial fibrillation, familial, 3,Beckwith-Wiedemann syndrome,Jervell and Lange-Nielsen syndrome 1,long QT syndrome 1,Short QT syndrome type 2	unknown	Detail
Uncertain significance	2021-09-01	criteria provided, single submitter	Atrial fibrillation, familial, 3,Beckwith-Wiedemann syndrome,Jervell and Lange-Nielsen syndrome 1,long QT syndrome 1,Short QT syndrome type 2	unknown	Detail
Uncertain significance	2022-12-01	criteria provided, single submitter		germline	Detail

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.417	long QT syndrome	NA	CLINVAR		Detail
0.133	Congenital long QT syndrome	NA	CLINVAR		Detail

Annotation

Annotations

Descrption	Source	Links
NM_000218.3(KCNQ1):c.1553G>A (p.Arg518Gln) AND Congenital long QT syndrome	ClinVar	Detail
NM_000218.3(KCNQ1):c.1553G>A (p.Arg518Gln) AND Long QT syndrome	ClinVar	Detail
NM_000218.3(KCNQ1):c.1553G>A (p.Arg518Gln) AND not provided	ClinVar	Detail
NM_000218.3(KCNQ1):c.1553G>A (p.Arg518Gln) AND not specified	ClinVar	Detail
NM_000218.3(KCNQ1):c.1553G>A (p.Arg518Gln) AND Cardiac arrhythmia	ClinVar	Detail
NM_000218.3(KCNQ1):c.1553G>A (p.Arg518Gln) AND multiple conditions	ClinVar	Detail
NM_000218.3(KCNQ1):c.1553G>A (p.Arg518Gln) AND multiple conditions	ClinVar	Detail
NM_000218.3(KCNQ1):c.1553G>A (p.Arg518Gln) AND multiple conditions	ClinVar	Detail
NM_000218.3(KCNQ1):c.1553G>A (p.Arg518Gln) AND multiple conditions	ClinVar	Detail
NM_000218.3(KCNQ1):c.1553G>A (p.Arg518Gln) AND multiple conditions	ClinVar	Detail
NM_000218.3(KCNQ1):c.1553G>A (p.Arg518Gln) AND Cardiovascular phenotype	ClinVar	Detail
NA	DisGeNET	Detail
NA	DisGeNET	Detail

Overlapped Transcript Coordinates

Gene	Transcript ID	Exon Number	Chromosome	Start	Stop	Type	Amino Mutation	Transcript Position	Links

Overlapped Transcript

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs145974930 dbSNP
Genome: hg19
Position: chr11:2,790,112-2,790,112
Variant Type: snv
Reference Allele: G
Alternative Allele: A
East Asian Chromosome Counts (ExAC): 8650
East Asian Allele Counts (ExAC): 0
East Asian Heterozygous Counts (ExAC): 0
East Asian Homozygous Counts (ExAC): 0
East Asian Allele Frequency (ExAC): 0.0
Chromosome Counts in All Race (ExAC): 121124
Allele Counts in All Race (ExAC): 3
Heterozygous Counts in All Race (ExAC): 3
Homozygous Counts in All Race (ExAC): 0
Allele Frequency in All Race (ExAC): 2.4768006340609624E-5

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