chr11:27667202:T>G Detail (hg19)

Information

Genome

Assembly Position
hg19 chr11:27,667,202-27,667,202
hg38 chr11:27,645,655-27,645,655 View the variant detail on this assembly version.

HGVS

[No Data.]
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:0.965
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.017 Mental disorders Two hundred and six patients with Diagnostic and Statistical Manual of Mental Di... BeFree 21188787 Detail
0.120 Mental Depression Two hundred and six patients with Diagnostic and Statistical Manual of Mental Di... BeFree 21188787 Detail
0.248 depressive disorder Two hundred and six patients with Diagnostic and Statistical Manual of Mental Di... BeFree 21188787 Detail
0.278 obesity The nominal associations of rs925946 and rs7498665 obesity risk variants near th... BeFree 23640704 Detail
0.011 Diabetes Mellitus, Non-Insulin-Dependent In the meta-analysis of 42 studies for 11 obesity/BMI-associated loci, we observ... BeFree 24528214 Detail
0.341 Diabetes Mellitus, Non-Insulin-Dependent In the meta-analysis of 42 studies for 11 obesity/BMI-associated loci, we observ... BeFree 24528214 Detail
0.155 obesity In the meta-analysis of 42 studies for 11 obesity/BMI-associated loci, we observ... BeFree 24528214 Detail
0.007 Diabetes Mellitus, Non-Insulin-Dependent In the meta-analysis of 42 studies for 11 obesity/BMI-associated loci, we observ... BeFree 24528214 Detail
0.278 obesity In the meta-analysis of 42 studies for 11 obesity/BMI-associated loci, we observ... BeFree 24528214 Detail
Annotation

Annotations

DescrptionSourceLinks
Two hundred and six patients with Diagnostic and Statistical Manual of Mental Disorders-IV MDD were ... DisGeNET Detail
Two hundred and six patients with Diagnostic and Statistical Manual of Mental Disorders-IV MDD were ... DisGeNET Detail
Two hundred and six patients with Diagnostic and Statistical Manual of Mental Disorders-IV MDD were ... DisGeNET Detail
The nominal associations of rs925946 and rs7498665 obesity risk variants near the BDNF and SH2B1 gen... DisGeNET Detail
In the meta-analysis of 42 studies for 11 obesity/BMI-associated loci, we observed a statistically s... DisGeNET Detail
In the meta-analysis of 42 studies for 11 obesity/BMI-associated loci, we observed a statistically s... DisGeNET Detail
In the meta-analysis of 42 studies for 11 obesity/BMI-associated loci, we observed a statistically s... DisGeNET Detail
In the meta-analysis of 42 studies for 11 obesity/BMI-associated loci, we observed a statistically s... DisGeNET Detail
In the meta-analysis of 42 studies for 11 obesity/BMI-associated loci, we observed a statistically s... DisGeNET Detail

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs925946 dbSNP
Genome
hg19
Position
chr11:27,667,202-27,667,202
Variant Type
snv
Reference Allele
T
Alternative Allele
G
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs925946
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.9649
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16170
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16758
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